PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_026879
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family MYB
Protein Properties Length: 292aa    MW: 31236.6 Da    PI: 8.8991
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_026879genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding31.54e-101155345
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                      W+ e d ++ +a + +  +   +W +Ia+ ++ g+t +++++++ 
      DCAR_026879 11 TWSREQDVKFENALATYSEDlsdRWQKIAADVP-GKTIEEVRHHYE 55
                     7********************************.**********96 PP
2Myb_DNA-binding45.61.6e-14122166347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+ l++ + +++G+g+W++I+r +  +Rt+ q+ s+ qky
      DCAR_026879 122 AWTEEEHRLFLLGLEKYGKGDWRSISRNFVVTRTPTQVASHAQKY 166
                      6*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512938.669762IPR017884SANT domain
SMARTSM007172.6E-7860IPR001005SANT/Myb domain
PfamPF002492.0E-81155IPR001005SANT/Myb domain
CDDcd001675.14E-81158No hitNo description
Gene3DG3DSA:1.10.10.604.1E-51164IPR009057Homeodomain-like
SuperFamilySSF466893.45E-111265IPR009057Homeodomain-like
PROSITE profilePS5129418.953115171IPR017930Myb domain
SuperFamilySSF466893.66E-17117172IPR009057Homeodomain-like
SMARTSM007171.1E-11119169IPR001005SANT/Myb domain
TIGRFAMsTIGR015571.5E-17119169IPR006447Myb domain, plants
PfamPF002492.1E-12122166IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-11122165IPR009057Homeodomain-like
CDDcd001673.34E-11122167No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MSSDESGDSS TWSREQDVKF ENALATYSED LSDRWQKIAA DVPGKTIEEV RHHYELLVED  60
VNQIESGCVP LPRYNSSSIG SVGQSGNEGT GKKGGNFGHL NSDSNHNGKA SKSEQERRKG  120
IAWTEEEHRL FLLGLEKYGK GDWRSISRNF VVTRTPTQVA SHAQKYFIRL SSINKDRRRS  180
SIHDITNVNN GEVSPLAPIT GQTNGSSAGG SSGKPSKQTP QSPLVASGVG MYGGTTIGQP  240
VGGSLVSGMP VNLPQPAHMA YGMRAPTGQV VGAPVNMGTM AYSMPQTSAQ R*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-16777676RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017223403.10.0PREDICTED: transcription factor DIVARICATA-like
RefseqXP_017223404.10.0PREDICTED: transcription factor DIVARICATA-like
RefseqXP_017223405.10.0PREDICTED: transcription factor DIVARICATA-like
RefseqXP_017223406.10.0PREDICTED: transcription factor DIVARICATA-like
SwissprotQ9FNN61e-111SRM1_ARATH; Transcription factor SRM1
TrEMBLA0A175YQ120.0A0A175YQ12_DAUCS; Uncharacterized protein
STRINGGorai.013G067600.11e-149(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA41492445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08520.11e-106MYB family protein
Publications ? help Back to Top
  1. Wang T, et al.
    Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1027-41
    [PMID:26243618]
  2. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]