PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_026883

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

TCP

Protein Properties

Length: 235aa MW: 24995.1 Da PI: 10.0085

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_026883	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	123.5	2.3e-38	22	117	2	89
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg.........k 89 ++kk + +++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++as++ +++ +ssa ++s + DCAR_026883 22 PVKKPPAKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFS-TVAVRSSATTPSLSspldqkpaqY 117 789******************************************************************777.344444444333332344444331 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51369	27.892	28	82	IPR017887	Transcription factor TCP subgroup
Pfam	PF03634	3.0E-33	28	127	IPR005333	Transcription factor, TCP

Sequence ? help Back to Top
Protein Sequence Length: 235 aa Download sequence Send to blast
MSDGLTNAGA IIEAPRTVVA APVKKPPAKD RHSKVDGRGR RIRMPIICAA RVFQLTRELG 60 HKSDGQTIEW LLRQAEPSII AATGTGTTPA SFSTVAVRSS ATTPSLSSPL DQKPAQYPTA 120 FLLGKRARDD DEENGDKNDH LGHDPTRPGG GGFWALPTRP DFGQVWSFAA PPHDMVVPSP 180 VTMASNNALA SRFMQQQAIG EASAARVGNY LPISQGHLNL LASLSGGRRE EDSR*

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00524	DAP	Transfer from AT5G23280	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK240798	4e-54	AK240798.1 Oryza sativa Japonica Group cDNA, clone: J065002G04, full insert sequence.
GenBank	AP004776	4e-54	AP004776.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0452F04.
GenBank	AP014958	4e-54	AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBank	CP012610	4e-54	CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017223475.1	1e-172	PREDICTED: transcription factor TCP7
Swissprot	Q9FMX2	8e-86	TCP7_ARATH; Transcription factor TCP7
TrEMBL	A0A175YPZ8	1e-170	A0A175YPZ8_DAUCS; Uncharacterized protein
STRING	Solyc04g009180.1.1	6e-93	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3951	22	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G23280.1	7e-65	TCP family protein

Link Out ? help Back to Top
Phytozome	DCAR_026883