PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_027015
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family CAMTA
Protein Properties Length: 644aa    MW: 73143.1 Da    PI: 5.9033
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_027015genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1164.71.6e-51301463118
         CG-1   3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrcy 99 
                  +e k+rwl+++ei+aiL n++++++   + + p+ g ++L++rk++r+frkDG++wkkkkdgktv+E+he+LKvg+ e +++yYah+e+nptf rrcy
  DCAR_027015  30 EEaKSRWLRPNEIHAILCNHKHFTIYVRPVNLPPAGMMVLFDRKMLRNFRKDGHNWKKKKDGKTVKEAHEHLKVGNDERIHVYYAHGEDNPTFVRRCY 127
                  4559********************************************************************************************** PP

         CG-1 100 wlLeeelekivlvhylevk 118
                  wlL+++le+ivlvhy++++
  DCAR_027015 128 WLLDKKLEHIVLVHYRDTH 146
                  ****************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143775.0825151IPR005559CG-1 DNA-binding domain
SMARTSM010768.8E-7328146IPR005559CG-1 DNA-binding domain
PfamPF038598.2E-4631144IPR005559CG-1 DNA-binding domain
SuperFamilySSF812961.27E-11381466IPR014756Immunoglobulin E-set
CDDcd002049.83E-9565636No hitNo description
SuperFamilySSF484033.11E-9568636IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.207.5E-8576637IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029710.949583636IPR020683Ankyrin repeat-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 644 aa     Download sequence    Send to blast
MEGAVPVRLV GSEIHGFHTM ADLDIGNVME EAKSRWLRPN EIHAILCNHK HFTIYVRPVN  60
LPPAGMMVLF DRKMLRNFRK DGHNWKKKKD GKTVKEAHEH LKVGNDERIH VYYAHGEDNP  120
TFVRRCYWLL DKKLEHIVLV HYRDTHESQG SPAAPIPSNS CSILSEPPAS RILSEESNSV  180
VNEIYYTSEK AYLEPTETIQ DHETRLHEIN TLDWEELVVP EDPNKLNAPE TGILSHFEQQ  240
NPYEMNFHRN NSNLLSTNIY SAEHNSLEKF SDLVVGSNLD HSNTLSNVYS DIVDGQINSD  300
LQKNGHKALN AVCGDSLDTI SRNGFQTQDS FGRWMNCVIT DSPDSAFTGD RNLESSISNG  360
QETSALGDQQ QSSFSEQIFS ITDVSPASAL TTEETKILVV GYFHQAQSPF EKCNLFCVCG  420
DECVTAELVQ PGVYRSFVSP HEPGVFDLYL SFDGQNPISQ VVTFEYKSPP TEKLVNQSDD  480
ESKWKEFRYQ MRLAHLLFST SRRSNTLSTK LSPNALKEAK FFAQKASQIG SNWTSFLKCI  540
KENKLSFPQA KDNLFELTLQ NRLQEWLLER VVERCKATDY DDQGQGVIHL CAILGYKWAV  600
PQFVLSGLSL DYRDKFGWTA LHWAAYCGRL VVISFLSQLL FFF*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator (PubMed:14581622). Binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in response to cold. Contributes together with CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:28351986). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:14581622, ECO:0000269|PubMed:28351986, ECO:0000305|PubMed:11925432}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00435DAPTransfer from AT4G16150Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat shock, UVB, wounding, abscisic acid, H(2)O(2) and salicylic acid. {ECO:0000269|PubMed:12218065}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017222907.10.0PREDICTED: calmodulin-binding transcription activator 6-like
SwissprotO234630.0CMTA5_ARATH; Calmodulin-binding transcription activator 5
TrEMBLA0A175YQ310.0A0A175YQ31_DAUCS; Uncharacterized protein
STRINGVIT_05s0077g01240.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45652232
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16150.10.0calmodulin binding;transcription regulators
Publications ? help Back to Top
  1. Ye J, et al.
    Arabidopsis formin3 directs the formation of actin cables and polarized growth in pollen tubes.
    Plant Cell, 2009. 21(12): p. 3868-84
    [PMID:20023198]
  2. Kidokoro S, et al.
    Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature.
    Plant Cell, 2017. 29(4): p. 760-774
    [PMID:28351986]
  3. Lan Y,Liu X,Fu Y,Huang S
    Arabidopsis class I formins control membrane-originated actin polymerization at pollen tube tips.
    PLoS Genet., 2018. 14(11): p. e1007789
    [PMID:30418966]