PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_027077
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family C2H2
Protein Properties Length: 235aa    MW: 26460.5 Da    PI: 10.3862
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_027077genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2130.000313960323
                 ETTTTEEESSHHHHHHHHHH.T CS
      zf-C2H2  3 CpdCgksFsrksnLkrHirt.H 23
                 C  Cg++F +++ L++H +  H
  DCAR_027077 39 CAVCGRRFYNSERLVNHFKQvH 60
                 9****************98766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015710.7833765IPR007087Zinc finger, C2H2
PROSITE patternPS0002803960IPR007087Zinc finger, C2H2
CDDcd061672.08E-854189No hitNo description
PfamPF019363.5E-5107190IPR021139NYN domain, limkain-b1-type
Gene3DG3DSA:3.40.50.10105.5E-5142195IPR029060PIN domain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005739Cellular Componentmitochondrion
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MAAFGNRNWL NSVKVEGNVM KGNMGNVSSG GVKVERSFCA VCGRRFYNSE RLVNHFKQVH  60
EAEQRKRVNQ IESARGSRRV KLVGKFSMKM RKYKNAVRDV LNPHVGNGLS DDLKRAGFWV  120
KAMSDKRDVA GDELGKCILN VIDMRQVECM VLVSDDPEFV SVLKEAKVRG LKTVVVGDRQ  180
DGELKRICDA AFSWKEIILG KAKKQAVSVV GHWKDRDVLK SLEWSYNPET EKTQ*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017220636.11e-171PREDICTED: uncharacterized protein LOC108197504
RefseqXP_017220637.11e-171PREDICTED: uncharacterized protein LOC108197504
RefseqXP_017220638.11e-171PREDICTED: uncharacterized protein LOC108197504
TrEMBLA0A175YQV61e-170A0A175YQV6_DAUCS; Uncharacterized protein
STRINGXP_002509600.13e-94(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA121251920
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G12240.11e-86C2H2 family protein