PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_027087
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family MYB_related
Protein Properties Length: 1092aa    MW: 121922 Da    PI: 8.7307
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_027087genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.53.5e-094681340
                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40
                      W++eE e++++a +++G++ Wk++ + +   R+ +++
      DCAR_027087 46 QWSKEELERFYEAYRKHGKD-WKKVGAVLR-SRSVEMV 81
                     6*****************99.******999.9998765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466898.22E-104290IPR009057Homeodomain-like
SMARTSM007171.2E-44391IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.7E-44681IPR009057Homeodomain-like
PfamPF002491.6E-74681IPR001005SANT/Myb domain
CDDcd001672.44E-64781No hitNo description
SMARTSM011356.0E-56602703IPR033471DIRP domain
PfamPF065841.3E-31602702IPR033471DIRP domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1092 aa     Download sequence    Send to blast
MGPPRKSRSV NKRYSDSYVV SPIKHDEAAD RRTPRKRKLV DMLGPQWSKE ELERFYEAYR  60
KHGKDWKKVG AVLRSRSVEM VEALYTMNRA YLSLPEGTAS VAGLIAMMTD HYCNMAGSDS  120
EHESIEGSGT SRKYQKRSQA KVPPKSSKGS EGRVTSNSQA IASSYDYLPS TKKKRSGGSR  180
PRVVGKRTPR FPVSYSHENV NGDTYFSPNR QGLRFDVDGN DSDVGHENLI ALAEASQRGG  240
SPRLLRSPKK MVAEGDIDGE GSMEADNGDY TRPKRYMMKS GNKSPFSQKG QRPYGKRLEL  300
DNDKNSQDEI REACSGTEGQ KLGAALEKFE IEVTNGKTAK YSQGQWKRSR KVLFDRDESS  360
ALTGLEALAN AILMPESTND NDSSVLIKEE SNEADEPESF EAIHTNHQSD KRWTVETKGY  420
QSNSGLKYXG KIPLIVLVVV LRLSWTLLVL LVSCQEKNRR LLHLKLHLHY ISFIYIEIQL  480
AEGHSDTHMS ESQIVEGKEL GMKSTSKGKR SSQSASPMLN KHPENSSSST GPRKEAGDSA  540
MSSVHLPGAD QFDVTNKRKS RRKTKIRKVN TYADSEVSDK TKKLLNCFSN DGVRRWCAYE  600
WFYSAIDYPW FAKREFVEYL LHVGLGHVPR LTHVEWGVIR SSLGKPRRFS EQFLKEEKQK  660
LNQYRDSVRT HYTELRSGTR EGLPADLARP LSVGQRVIAI HPKTREIHDG SVLTVDHNRC  720
RVQFDRPELG VEFVMDIDCM PLNPLENMPT SLTIHMSAAD PNNLIKFKMN GQMGSVVVDS  780
QAKMGPKDNV SSQQISYSQP SSLAQIQAKE ADVQAIADLT RALEKKQVLV SELREMNNDV  840
LENQKDGISS LKDSELFKKQ YAAILVQLRD ADEQVTSALS CLKQRNTYQE NVSLAWPRSM  900
ANPVASVGVL NASYCSEVQT EKSGSHVNEI VESSKTRAGI MVNAAIQAFS SMKGGENTLE  960
KIEEAIDYVY GQLPSDDSYV LSEKCFTAME RGDMASQEQE KCGTFGPLQV PPTPLLNSSG  1020
IPSELITQCV ATLLMIQKCT ERQFPPADVA QILDSAVASL RPCSVQNLPV YADIEKCMIM  1080
IRNQIMALVP S*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13338PRKRKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017223238.10.0PREDICTED: LOW QUALITY PROTEIN: protein ALWAYS EARLY 3-like
TrEMBLA0A175YQU90.0A0A175YQU9_DAUCS; Uncharacterized protein
STRINGSolyc01g067560.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA33122333
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21430.20.0DNA binding