PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_027276
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family bHLH
Protein Properties Length: 243aa    MW: 28189.9 Da    PI: 9.8949
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_027276genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH15.92.3e-0576110339
                  HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-ST CS
          HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKls 39 
                  r h   Er RR++ ++ + +L ++lP++  ++  Kls
  DCAR_027276  76 RQHVLKERMRREEQRHNYMRLHSMLPSR--TKTDKLS 110
                  67999**********************7..3666665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474596.22E-772138IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS508889.34373122IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.6E-476141IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MEHLLDESDF TWLREVMFWA QPSAFVSYTQ HKLDNTPAFE SNNTNIKKRM REFLISTTVS  60
TSSAQRNEVL EETRSRQHVL KERMRREEQR HNYMRLHSML PSRTKTDKLS ITVTAAREVE  120
GLKKRREELK RHNSEMNKML RAREGSSDQG SEMEEAKIRI NVEHPSSGID SMLEVLKCLK  180
QTDSSTRLVQ SQFLPQQFSA VLGVETKVGA AEIESAIHRK LVQTEQRFRI NNKEASYKDG  240
TF*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17585RQHVLKERMRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017221683.11e-180PREDICTED: transcription factor bHLH92-like
TrEMBLA0A175YR531e-179A0A175YR53_DAUCS; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA124631821
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43650.12e-38bHLH family protein