PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_027367
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family GATA
Protein Properties Length: 238aa    MW: 26631.1 Da    PI: 8.844
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_027367genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA59.16e-19164198135
         GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                  C++C++ kTp+WR gp g+ktLCnaCG++y++ +l
  DCAR_027367 164 CQHCQAEKTPQWRAGPMGPKTLCNACGVRYKSGRL 198
                  *******************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004016.0E-17158208IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.097158194IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.9E-15160221No hitNo description
Gene3DG3DSA:3.30.50.104.7E-15161196IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.81E-14163220No hitNo description
PROSITE patternPS003440164189IPR000679Zinc finger, GATA-type
PfamPF003201.5E-16164198IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MESLGNPPFL LMDGDDIFNF PLDGEDGIDP GRRFSELEFA EEELEWLSNK DAFPAVETGL  60
DIFTPHQNLQ SPISVLENSS SSSNSNGSGT MSCCGALPVP ISFPVHYPVR ARSKRRRRRR  120
REFPEFPVAV QQAGWWNQVN VRNVKQDFPK ALPITGGSSI GRRCQHCQAE KTPQWRAGPM  180
GPKTLCNACG VRYKSGRLVP EYRPANSPTF SSQVHSNSHR KIMEMRRHTL GDNMMVK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1111120RSKRRRRRRR
2113118KRRRRR
3114120RRRRRRR
4114121RRRRRRRE
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes. {ECO:0000269|PubMed:12139008}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017220038.11e-178PREDICTED: GATA transcription factor 1
SwissprotQ8LAU93e-42GATA1_ARATH; GATA transcription factor 1
TrEMBLA0A175YQ011e-177A0A175YQ01_DAUCS; Uncharacterized protein
STRINGEOY054291e-67(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40762445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24050.14e-40GATA transcription factor 1