PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_027400
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family HD-ZIP
Protein Properties Length: 309aa    MW: 35454.7 Da    PI: 6.7539
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_027400genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox53.34.7e-17133186356
                  --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
     Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                  k++++++eq++ Le+ Fe  +++  +++ +LAk lgL+ rq+ +WFqNrR ++k
  DCAR_027400 133 KKRRLNSEQVKMLEKNFELGNKLEPDRKLHLAKLLGLPPRQIAIWFQNRRVRWK 186
                  45689************************************************9 PP
2HD-ZIP_I/II120.96.4e-39132222191
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                  ekkrrl++eqvk+LE++Fe  +kLep+rK +la+ Lgl prq+a+WFqnrR R+ktkqlE+dy+ Lkr++da+k+en++L++++++L++++
  DCAR_027400 132 EKKRRLNSEQVKMLEKNFELGNKLEPDRKLHLAKLLGLPPRQIAIWFQNRRVRWKTKQLENDYQLLKRRIDAIKAENSTLQSQNQRLHDQI 222
                  69**************************************************************************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466896.42E-19124190IPR009057Homeodomain-like
PROSITE profilePS5007116.228128188IPR001356Homeobox domain
SMARTSM003891.5E-17131192IPR001356Homeobox domain
CDDcd000861.37E-14133189No hitNo description
PfamPF000461.9E-14133186IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.9E-18135195IPR009057Homeodomain-like
PROSITE patternPS000270163186IPR017970Homeobox, conserved site
PfamPF021835.9E-9188227IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MFPDMNSCNK DISFFSSNFK LQTATSHQDD HNQPHQPSLN QNLLSPQEFH GSLRLYLIVS  60
EVYPLLFTHY IFDIGAGIGS FLGKRSLSFG GRVPQHEADC HEESERNRIM NSGNHTEDLS  120
DDEDGLSPAG GEKKRRLNSE QVKMLEKNFE LGNKLEPDRK LHLAKLLGLP PRQIAIWFQN  180
RRVRWKTKQL ENDYQLLKRR IDAIKAENST LQSQNQRLHD QILALKKLDP AELINLNKKT  240
DGSCSNTSEN SSDINLDISR RTAPARPQIR PQEVDHYHHH QPQTVKEEGF SNLLCGIDDQ  300
AEFWPWLE*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1180188RRVRWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may act in the sucrose-signaling pathway. {ECO:0000269|PubMed:11292072}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017220723.10.0PREDICTED: homeobox-leucine zipper protein ATHB-13 isoform X1
SwissprotQ8LC031e-72ATB13_ARATH; Homeobox-leucine zipper protein ATHB-13
TrEMBLA0A175YPY30.0A0A175YPY3_DAUCS; Uncharacterized protein
STRINGcassava4.1_013285m1e-90(Manihot esculenta)
STRINGXP_002520111.11e-90(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8482498
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69780.15e-75HD-ZIP family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Ribone PA,Capella M,Chan RL
    Functional characterization of the homeodomain leucine zipper I transcription factor AtHB13 reveals a crucial role in Arabidopsis development.
    J. Exp. Bot., 2015. 66(19): p. 5929-43
    [PMID:26136262]
  3. Wang X, et al.
    Overexpressed BRH1, a RING finger gene, alters rosette leaf shape in Arabidopsis thaliana.
    Sci China Life Sci, 2018. 61(1): p. 79-87
    [PMID:28887625]
  4. Ebrahimian-Motlagh S, et al.
    JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13.
    Front Plant Sci, 2017. 8: p. 2118
    [PMID:29326734]