PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_027413
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family ZF-HD
Protein Properties Length: 222aa    MW: 25042 Da    PI: 9.4114
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_027413genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer101.26.9e-324595458
  ZF-HD_dimer  4 vrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58
                 + YkeClkNhA+s+Ggha+DGCgEfmps    +++++lkCaACgCHRnFHRre +
  DCAR_027413 45 ISYKECLKNHAVSIGGHALDGCGEFMPS----THPNSLKCAACGCHRNFHRREAD 95
                 78*************************9....7899****************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257744.0E-1945100IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047705.1E-274594IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152326.1534793IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015669.2E-294793IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.601.1E-27119192IPR009057Homeodomain-like
SuperFamilySSF466893.17E-19122192IPR009057Homeodomain-like
TIGRFAMsTIGR015656.6E-25131187IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
METNPKLTSQ TSDPRTTNIN NAHPIPRSLI SSSHLNKKHH QQHIISYKEC LKNHAVSIGG  60
HALDGCGEFM PSTHPNSLKC AACGCHRNFH RREADEPDSP TPHFLTFRLI STLAPDEHKH  120
RHHAAENASS RKRLRTRFSR EQKERMRVFA EKLGWRMHKS DEVSVEEFCK EIGVGKSVLK  180
VWMHNNKTTL GKRDDSSNNV AARDGNIGGG EENEISTQHH L*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A4e-211321871873ZF-HD homeobox family protein
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1130136RKRLRTR
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017222358.11e-165PREDICTED: zinc-finger homeodomain protein 1
SwissprotQ9LXG03e-48ZHD8_ARATH; Zinc-finger homeodomain protein 8
TrEMBLA0A175YNI11e-164A0A175YNI1_DAUCS; Uncharacterized protein
STRINGXP_010257380.14e-59(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10882485
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15210.11e-50homeobox protein 30
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]