PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_027459
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family C2H2
Protein Properties Length: 459aa    MW: 51691.8 Da    PI: 7.1404
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_027459genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.90.00033373395123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  ++Cp C+k F++   L  H rtH
  DCAR_027459 373 HQCPFCPKIFKSGQALGGHKRTH 395
                  79*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.914067IPR007087Zinc finger, C2H2
SMARTSM003550.214062IPR015880Zinc finger, C2H2-like
PfamPF139126.9E-74164IPR007087Zinc finger, C2H2
SuperFamilySSF576673.28E-64162No hitNo description
PROSITE patternPS0002804262IPR007087Zinc finger, C2H2
SuperFamilySSF576673.28E-6287311No hitNo description
PfamPF139129.0E-7292311IPR007087Zinc finger, C2H2
PROSITE profilePS501578.725292319IPR007087Zinc finger, C2H2
SuperFamilySSF576674.58E-5371400No hitNo description
PfamPF139123.9E-7373395IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.201373400IPR007087Zinc finger, C2H2
SMARTSM003550.014373395IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280375395IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 459 aa     Download sequence    Send to blast
MQALGDESNE VGGGSGYGLR ENPKRTWRAV DATFALPQER VCKQCGKGFQ SLKALCGHMA  60
CHSEKEKVLR DTNFWTSENS KLGDSYSDTE EELMRQTRSK TRTYKKSVVK SSEFGRGSSS  120
VCEVQQQEME DVAMCLMMLS RDSWNWGGVN SVVESSDNNS VVLETKSSSI DMKAGRNDGV  180
YFGDEIIDKK KLGDRKLKTS GLDTESFQFE NCSSGYLRNG VKKVDSDISI DELLRNGECK  240
DAELGMIYNR GKHYDAEACR SMKFMMYDSK KRARDDYEAA EPSKNAQKKR KYNCVNCNKS  300
FNSFQALGGH RPCNKRTTPT FHLEYESDDY SLEDEDMALD STPIQRYGYK KPTSRDYSVD  360
AKKRIRPKKV KGHQCPFCPK IFKSGQALGG HKRTHFINAP IDFHPPSPDI NQEAAVQEAT  420
TCRNLQEATA TRSLIDLNLP APEQDDELDE SNKFICLD*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1269290KKRARDDYEAAEPSKNAQKKRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017222010.10.0PREDICTED: uncharacterized protein LOC108198743
TrEMBLA0A175YND80.0A0A175YND8_DAUCS; Uncharacterized protein
STRINGXP_009631793.11e-110(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13432255
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26610.18e-30C2H2-like zinc finger protein