PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_027556

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

MYB_related

Protein Properties

Length: 277aa MW: 31796.8 Da PI: 8.2511

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_027556	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	41.5	3.2e-13	122	166	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ +++ + +++G+g+W+ I+r + ++t q+ s+ qky DCAR_027556 122 PWTEEEHRQFLMGLRKHGKGDWRNISRNFVITKTSTQVASHAQKY 166 8***************************889*********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	5.517	17	71	IPR017877	Myb-like domain
SMART	SM00717	8.7E-5	21	73	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	1.58E-9	23	77	IPR009057	Homeodomain-like
CDD	cd00167	0.00497	24	70	No hit	No description
Gene3D	G3DSA:1.10.10.60	2.8E-11	113	173	IPR009057	Homeodomain-like
PROSITE profile	PS51294	19.792	115	171	IPR017930	Myb domain
SuperFamily	SSF46689	1.08E-15	117	170	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.1E-16	118	170	IPR006447	Myb domain, plants
SMART	SM00717	1.3E-11	119	169	IPR001005	SANT/Myb domain
CDD	cd00167	2.01E-9	122	166	No hit	No description
Pfam	PF00249	1.0E-11	122	166	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 277 aa Download sequence Send to blast
METLNPSSHT FTSSWLKQGF QRAKWTTEDN KMFESCLAFI DTETPDRWLM VASMIPGKSV 60 LDVIEQYKKL EDDISDIEAG LFLIEENLQN DSSTAKNLEL NEFGKRPLAC RSSDHEKKKG 120 VPWTEEEHRQ FLMGLRKHGK GDWRNISRNF VITKTSTQVA SHAQKYYLRQ LSEGKEKKRP 180 SIHDITTVHL TNATQSEKHK LSADNKSTVV PQPEKSISMP RYTLDRNNTD YGSSMMFNSM 240 HTNAFMPFKY EYGGHGADIN PLNSGFQFQA PRHQIW*

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269\|PubMed:11937495, ECO:0000269\|PubMed:9118809}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017222833.1	0.0	PREDICTED: transcription factor DIVARICATA-like
Refseq	XP_017222834.1	0.0	PREDICTED: transcription factor DIVARICATA-like
Swissprot	Q8S9H7	3e-65	DIV_ANTMA; Transcription factor DIVARICATA
TrEMBL	A0A175YQC9	0.0	A0A175YQC9_DAUCS; Uncharacterized protein
STRING	VIT_13s0019g03370.t01	4e-99	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA458	24	140

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38090.1	3e-79	MYB family protein

Link Out ? help Back to Top
Phytozome	DCAR_027556

Publications ? help Back to Top
Galego L,Almeida J Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers. Genes Dev., 2002. 16(7): p. 880-91 [PMID:11937495] Almeida J,Rocheta M,Galego L Genetic control of flower shape in Antirrhinum majus. Development, 1997. 124(7): p. 1387-92 [PMID:9118809]