PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_027598

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

LBD

Protein Properties

Length: 216aa MW: 23600.4 Da PI: 6.4001

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_027598	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	123.6	1e-38	7	107	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelall 97 +C aCk+lrrkC+++Cv+apyf +q +++fa vh++FGas+v+kll +lp ++r+da+++++yeA ar++dPvyG+v+++++lqqq+++l++e++ l DCAR_027598 7 SCGACKFLRRKCTSECVFAPYFSYDQsANHFAKVHRVFGASKVSKLLLHLPVHRRSDAAATIAYEALARMHDPVYGCVSHVFALQQQVACLQHEIDIL 104 6*********************9978*****************************************************************999 PP DUF260 98 kee 100 +++ DCAR_027598 105 NNQ 107 887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	22.026	6	108	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	6.6E-37	7	104	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 216 aa Download sequence Send to blast
MTGPGSSCGA CKFLRRKCTS ECVFAPYFSY DQSANHFAKV HRVFGASKVS KLLLHLPVHR 60 RSDAAATIAY EALARMHDPV YGCVSHVFAL QQQVACLQHE IDILNNQMAN QAFQARNNGA 120 FGATNNPSVG FQFDSQNNEN MTNCATQSQM LLNGGVTADN QEFHCQINTT LPTLYGCEEH 180 MYNVPSDIDL PESVSGGMNQ EIYVPFLWTG SSCSS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-35	3	112	7	115	LOB family transfactor Ramosa2.1
5ly0_B	2e-35	3	112	7	115	LOB family transfactor Ramosa2.1
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Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By auxin. {ECO:0000269\|PubMed:17259263}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017222340.1	1e-162	PREDICTED: LOB domain-containing protein 33-like
Swissprot	Q9LHS8	2e-52	LBD33_ARATH; LOB domain-containing protein 33
TrEMBL	A0A175YNZ9	1e-161	A0A175YNZ9_DAUCS; Uncharacterized protein
STRING	VIT_13s0019g02060.t01	8e-72	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12769	15	21

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06080.1	7e-55	LOB domain-containing protein 33

Link Out ? help Back to Top
Phytozome	DCAR_027598

Publications ? help Back to Top
Bargmann BO,Birnbaum KD,Brenner ED An undergraduate study of two transcription factors that promote lateral root formation. Biochem Mol Biol Educ, 2014 May-Jun. 42(3): p. 237-45 [PMID:24615800]