PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_027740
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family FAR1
Protein Properties Length: 643aa    MW: 71651 Da    PI: 7.2635
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_027740genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR125.44.7e-08553622177
         FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwe 77 
                  +fY eY++ +G  vrks+ k++   g +t++   Cs  g+ e ++ k    rr++++ +++C+ak+ +k+  +g ++
  DCAR_027740 553 EFYTEYGRLCGLVVRKSSAKYK--GGVMTHKYVECSSAGRFEGKTIK----RRRTNTRKCECEAKIILKNCPTG-YY 622
                  6****************99888..8989999999*****99987766....8889999**********998544.44 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF019915.5E-161671IPR002842ATPase, V1/A1 complex, subunit E
PfamPF019916.3E-37299456IPR002842ATPase, V1/A1 complex, subunit E
SuperFamilySSF1605271.96E-19320456No hitNo description
PfamPF031017.3E-5553622IPR004330FAR1 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0015991Biological ProcessATP hydrolysis coupled proton transport
GO:0033178Cellular Componentproton-transporting two-sector ATPase complex, catalytic domain
GO:0046961Molecular Functionproton-transporting ATPase activity, rotational mechanism
Sequence ? help Back to Top
Protein Sequence    Length: 643 aa     Download sequence    Send to blast
MNDSDVSRQI QQMVQFIRQE AEEKANEISV SAEEEFNIEK LQIVEAEKKK IRQEYERKEK  60
QVDVRKKIFY PTTMDTTMDN VVNTAKILNT PVAQVATLLG HSFVHPNAPG AHRATVVVDP  120
NILCAQRALF VGQLVVNPNA LSVEGTLVMD KQAVNHNMSI AQGASVVDQL TVNHNMPDQH  180
ALNRNMLCAQ VATVLGQQAV NPISCAQAAT TVGQHAVNPD VVGAQRAMVM GESSAQGAMI  240
VGQYNVNPNA PGAQRAMFVG KHVVNPHVSG AQGATIMSQH DSNPVVLGAQ QAMVVAHYKG  300
NEYSMQLNAS RIKVLQAQDD LVNAMKEAAS QELLKVSHHD SHHHLHHHHD YQGLMKALVV  360
QCLLRLKEPA VLLRCRKDDI TLLNSVLDSA KEEYAKEAKV HQPEIIVDDV HLPPSPSTHG  420
PSCSGGIVMA SRDGKIVIEN TLDARLDVLF RKKLPEPSVH RISFEIGHVY HTLFFFKSLH  480
LLLMWLYILL SHTLLSGGVS GIPWETNELN EDIYVDSYKY TSPDGEEYWI PKCDKKSKPY  540
VNQMFPDVEA VFEFYTEYGR LCGLVVRKSS AKYKGGVMTH KYVECSSAGR FEGKTIKRRR  600
TNTRKCECEA KIILKNCPTG YYIGTFLHDN YIFIHQDFEV LH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d80_k7e-1130847682232V-type proton ATPase subunit E
5d80_m7e-1130847682232V-type proton ATPase subunit E
5vox_G7e-1130847682232V-type proton ATPase subunit E
5vox_I7e-1130847682232V-type proton ATPase subunit E
5vox_K7e-1130847682232V-type proton ATPase subunit E
5voy_G7e-1130847682232V-type proton ATPase subunit E
5voy_I7e-1130847682232V-type proton ATPase subunit E
5voy_K7e-1130847682232V-type proton ATPase subunit E
5voz_G7e-1130847682232V-type proton ATPase subunit E
5voz_I7e-1130847682232V-type proton ATPase subunit E
5voz_K7e-1130847682232V-type proton ATPase subunit E
6o7v_G7e-1130847682232V-type proton ATPase subunit E
6o7v_I7e-1130847682232V-type proton ATPase subunit E
6o7v_K7e-1130847682232V-type proton ATPase subunit E
6o7w_G7e-1130847682232V-type proton ATPase subunit E
6o7w_I7e-1130847682232V-type proton ATPase subunit E
6o7w_K7e-1130847682232V-type proton ATPase subunit E
6o7x_G7e-1130847682232V-type proton ATPase subunit E
6o7x_I7e-1130847682232V-type proton ATPase subunit E
6o7x_K7e-1130847682232V-type proton ATPase subunit E
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ2459334e-44AJ245933.1 Beta vulgaris partial mRNA for V-type H(+)-ATPase subunit E.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A175YP010.0A0A175YP01_DAUCS; Uncharacterized protein