PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_028008
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family bHLH
Protein Properties Length: 226aa    MW: 25079.9 Da    PI: 9.1028
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_028008genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.93.3e-124086354
                 HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
          HLH  3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                 ++h+e+E+rRR+riN  +++Lr l+P       +K++Ka+ L +++  +k+L
  DCAR_028008 40 KSHSEAEKRRRERINAHLDTLRGLVPCT-----GKMDKASLLAEVISQVKQL 86
                 58*************************9.....9************999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.6943786IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.0E-104086IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.14E-94087No hitNo description
SuperFamilySSF474595.63E-134191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.6E-124187IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.0E-114392IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF550213.66E-5117202No hitNo description
Gene3DG3DSA:3.30.70.2609.4E-5120174No hitNo description
CDDcd048736.87E-4124193No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MLNGENLLDD GEKVETLKAM EVLDEKKDGD IEVKSVAALK SHSEAEKRRR ERINAHLDTL  60
RGLVPCTGKM DKASLLAEVI SQVKQLKVSA AEASKGLLIA TDADEVKVEP LKRSSACGTY  120
YLASVCCDYK REVLSDMKQA LESLNLNIVK AEISTFKKRM KYVFVFTSSK DNGNAKEHLF  180
LMNTVRQALS SILEKISLSM EYTPRTTPPN KRRKISLYES SSLSS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017219991.11e-163PREDICTED: transcription factor bHLH30-like
TrEMBLA0A175YMU91e-162A0A175YMU9_DAUCS; Uncharacterized protein
STRINGVIT_14s0068g01580.t018e-74(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA67302230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40200.12e-28bHLH family protein