PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_028055

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

HB-other

Protein Properties

Length: 1657aa MW: 187237 Da PI: 5.9327

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_028055	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	54.8	1.6e-17	18	73	2	57
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 kR+ t+ qle+Le+ ++ + yps+++r++L+ lgLt+rq ++WF+ rR k+kk DCAR_028055 18 PKRQMKTPFQLEALERTYAAETYPSEATRADLSVLLGLTDRQLQMWFCHRRLKDKK 73 69****************************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.0E-16	4	74	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.58E-15	11	74	IPR009057	Homeodomain-like
PROSITE profile	PS50071	15.597	14	74	IPR001356	Homeobox domain
SMART	SM00389	4.7E-16	16	78	IPR001356	Homeobox domain
Pfam	PF00046	3.9E-15	18	73	IPR001356	Homeobox domain
CDD	cd00086	1.11E-12	19	74	No hit	No description
PROSITE profile	PS50827	16.873	489	548	IPR018501	DDT domain
SMART	SM00571	4.0E-22	489	548	IPR018501	DDT domain
Pfam	PF02791	2.4E-18	491	545	IPR018501	DDT domain
Pfam	PF05066	2.6E-11	671	738	IPR007759	HB1/Asxl, restriction endonuclease HTH domain
Pfam	PF15612	2.3E-5	866	910	IPR028942	WHIM1 domain
Pfam	PF15613	3.0E-12	1042	1113	IPR028941	WHIM2 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1657 aa Download sequence Send to blast
MEAGGSEGDR TGDGSVKPKR QMKTPFQLEA LERTYAAETY PSEATRADLS VLLGLTDRQL 60 QMWFCHRRLK DKKEGAAKNQ LATPVARKGS FDSHTDELKV VELGRDNGSG SRSRSGSGSD 120 SSQFSDPEDM PLRWQYELSP QSAKVQRVIS CIEAQLGGPL REDGPIIGVD FDEIPPGADR 180 TSIGRMEHRE RSKNSHDGQL YERAKPSKSK AALGGVCEPA ELNNKADGYR RSPSNFYDLS 240 PDNPSSKRSF MQGNKQWSRQ YVAQVQVSGV GQFSQEGKQA QFLSSSVGND YFQNAEEPLP 300 LGKKRKNEDR IDMEVSHEKK SRRDLEKEDL LRRKRDEQMK KEMEKQDRER RKEEERLLRE 360 KQRREEKYQR EERREHERRE RFLQKELLKV ERKKQMEEVR REREAAKQKI TMERAALRRI 420 AKESLELIED ERLELMELAA SSRGLPSIVA LDYETLQNLE SFRDQLCTFP PKSVHLKKPF 480 SIKPWNDSED NIGNLFMVWR FCNTFLDVLG LWPFTLDEFI QALHEYDSRL LAEIHIALLK 540 LVVRDIEEGA RTQCGGTGTN QYTAANPEGG HPQIVEGAFK WGFDIRYWKK HLNPLTWPEI 600 LRQFGLSAGC GPQLTKGSEE NANLHDKDEA KGCEDVVSML RDGSAVENAV NVMKEKGLPQ 660 QRKSRNRLTP GTIKFAAYHI LCLEGSKGLT LIELADKIQK SGLRDLSTSK TPDATVSVAL 720 SRDPTLFVRI APLTYCVRPA FRKDPADGEA VIAAARDEIQ KFLNGSLTEE TNGDAEKDDD 780 SDSDIADGLE GDEIATPVGV NKISDDFKES GTLLATSNNS SHHDMQSTLK SNPDTAGHHI 840 NQCYVTGKDD AESDHFQGLM GVDESNSGEP WVQGLTEGEY CDLCVEERLC ALVVLISVVN 900 EGNIVRAVLE DRLDAANALK KQMWSETQLG KRRMKEDNLA KFNDFSVTAA ADSSQSQLRV 960 VQNRVDELAL VVSEAHPVDL ENVHKDDNYP NGVVNERSLI VHDSCISQII PSIQHDALKS 1020 ERSRMQLKSY IGHRAEEMHV YRSLPLGQDR RHNRYWKFVA SGSRHDPGSG RIFVELCEGY 1080 WRLIDSEEAF DALLMSLDTR GLRESHLHIM LRHSETSFKD NLRKNLQSSC DETGTVPKVE 1140 PTELSSNALC IYSGKRDSNS DMESSSLRVE LGINETEKIN AFRRYQDLES WMWKECFNSS 1200 NLCAMRNGQK AITPVLWICD FCLNTFILKE HNCPSCQREI STFGNRFTYL EPAIQSEDQK 1260 EINFRNPVVS DPFFTFKIRM MKSLLAFVEV SVSSEAFQSF WSRGRRNWGL NLQNASSVED 1320 ILQILIQFEG GIKRDWLASD FETTTELNSC AFPGKIVTQS DKSVAQLPWL PRTSAAVALR 1380 LFELDSSIFY SEHQKAEAYS MTEIAKFELP TKFANMKDVQ HVELTGVHQR ENKASSGAMR 1440 GISACRQAIS SRGGAQPRGR VQKKIHKSRS KPVRRSNKVK KTMAPGFMQQ EKKAYYQKQG 1500 HGYNHGPRTV RKRRETMDVE EMQLGHFVEL QEHRSLDGIG ISHSPNNANM KWVEESGKLQ 1560 DAGTGNCDST EASESDEGAD ATRYRHLHVE PSFGAPSDRS ARDMVETSDD DAEIDDVHDY 1620 EDDNNIDDVI MNDGPHGNNV ESLETSGDYS DSSGMD*

Sequence ? help Back to Top

Protein Sequence Length: 1657 aa Download sequence Send to blast

MEAGGSEGDR TGDGSVKPKR QMKTPFQLEA LERTYAAETY PSEATRADLS VLLGLTDRQL  60
QMWFCHRRLK DKKEGAAKNQ LATPVARKGS FDSHTDELKV VELGRDNGSG SRSRSGSGSD  120
SSQFSDPEDM PLRWQYELSP QSAKVQRVIS CIEAQLGGPL REDGPIIGVD FDEIPPGADR  180
TSIGRMEHRE RSKNSHDGQL YERAKPSKSK AALGGVCEPA ELNNKADGYR RSPSNFYDLS  240
PDNPSSKRSF MQGNKQWSRQ YVAQVQVSGV GQFSQEGKQA QFLSSSVGND YFQNAEEPLP  300
LGKKRKNEDR IDMEVSHEKK SRRDLEKEDL LRRKRDEQMK KEMEKQDRER RKEEERLLRE  360
KQRREEKYQR EERREHERRE RFLQKELLKV ERKKQMEEVR REREAAKQKI TMERAALRRI  420
AKESLELIED ERLELMELAA SSRGLPSIVA LDYETLQNLE SFRDQLCTFP PKSVHLKKPF  480
SIKPWNDSED NIGNLFMVWR FCNTFLDVLG LWPFTLDEFI QALHEYDSRL LAEIHIALLK  540
LVVRDIEEGA RTQCGGTGTN QYTAANPEGG HPQIVEGAFK WGFDIRYWKK HLNPLTWPEI  600
LRQFGLSAGC GPQLTKGSEE NANLHDKDEA KGCEDVVSML RDGSAVENAV NVMKEKGLPQ  660
QRKSRNRLTP GTIKFAAYHI LCLEGSKGLT LIELADKIQK SGLRDLSTSK TPDATVSVAL  720
SRDPTLFVRI APLTYCVRPA FRKDPADGEA VIAAARDEIQ KFLNGSLTEE TNGDAEKDDD  780
SDSDIADGLE GDEIATPVGV NKISDDFKES GTLLATSNNS SHHDMQSTLK SNPDTAGHHI  840
NQCYVTGKDD AESDHFQGLM GVDESNSGEP WVQGLTEGEY CDLCVEERLC ALVVLISVVN  900
EGNIVRAVLE DRLDAANALK KQMWSETQLG KRRMKEDNLA KFNDFSVTAA ADSSQSQLRV  960
VQNRVDELAL VVSEAHPVDL ENVHKDDNYP NGVVNERSLI VHDSCISQII PSIQHDALKS  1020
ERSRMQLKSY IGHRAEEMHV YRSLPLGQDR RHNRYWKFVA SGSRHDPGSG RIFVELCEGY  1080
WRLIDSEEAF DALLMSLDTR GLRESHLHIM LRHSETSFKD NLRKNLQSSC DETGTVPKVE  1140
PTELSSNALC IYSGKRDSNS DMESSSLRVE LGINETEKIN AFRRYQDLES WMWKECFNSS  1200
NLCAMRNGQK AITPVLWICD FCLNTFILKE HNCPSCQREI STFGNRFTYL EPAIQSEDQK  1260
EINFRNPVVS DPFFTFKIRM MKSLLAFVEV SVSSEAFQSF WSRGRRNWGL NLQNASSVED  1320
ILQILIQFEG GIKRDWLASD FETTTELNSC AFPGKIVTQS DKSVAQLPWL PRTSAAVALR  1380
LFELDSSIFY SEHQKAEAYS MTEIAKFELP TKFANMKDVQ HVELTGVHQR ENKASSGAMR  1440
GISACRQAIS SRGGAQPRGR VQKKIHKSRS KPVRRSNKVK KTMAPGFMQQ EKKAYYQKQG  1500
HGYNHGPRTV RKRRETMDVE EMQLGHFVEL QEHRSLDGIG ISHSPNNANM KWVEESGKLQ  1560
DAGTGNCDST EASESDEGAD ATRYRHLHVE PSFGAPSDRS ARDMVETSDD DAEIDDVHDY  1620
EDDNNIDDVI MNDGPHGNNV ESLETSGDYS DSSGMD*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	66	73	RRLKDKKE
2	1461	1480	QKKIHKSRSKPVRRSNKVKK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017222565.1	0.0	PREDICTED: homeobox-DDT domain protein RLT1-like isoform X1
TrEMBL	A0A175YM41	0.0	A0A175YM41_DAUCS; Uncharacterized protein
STRING	XP_009781785.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2142	23	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28420.1	0.0	homeobox-1

Link Out ? help Back to Top
Phytozome	DCAR_028055