PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_028067

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

TCP

Protein Properties

Length: 189aa MW: 19998.6 Da PI: 6.3421

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_028067	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	83.1	7.1e-26	3	79	8	86
TCP 8 hskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnss 86 +++ h kv gR RvR++ aar+F+L++eLG+ +d++ti+WLl+qa+pai tgt++++a +++s s+ +s + DCAR_028067 3 KKDTHHKVYGRENRVRIPKVAAARVFQLTRELGHSTDGETIQWLLRQAEPAIRRHTGTGTIPAVPISSGSASVPQS--T 79 689999****************************************************999994443333332222..2 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	4.0E-22	3	77	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	18.461	3	57	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 189 aa Download sequence Send to blast
MVKKDTHHKV YGRENRVRIP KVAAARVFQL TRELGHSTDG ETIQWLLRQA EPAIRRHTGT 60 GTIPAVPISS GSASVPQSTS PPSVFAPLNT SSNIIAPQQP QLPPPDLLMQ TSTCGSTWGA 120 ALGGTVSASL QVGSSTMVPA MVDPAPGPSE SCMVQQQNQG FYLSLLMQDD EIINDLQFLH 180 DEGGSSAL*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017221493.1	1e-136	PREDICTED: transcription factor PCF1-like
TrEMBL	A0A175YN04	1e-135	A0A175YN04_DAUCS; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA248	24	201

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G51910.2	2e-26	TCP family protein

Link Out ? help Back to Top
Phytozome	DCAR_028067