PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_028123
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family B3
Protein Properties Length: 1003aa    MW: 110523 Da    PI: 6.9691
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_028123genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B335.22.3e-11505571164
                  EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TT CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkG 64 
                  f+kvlt sd++k grlvlpkk+ae +   ++++e++ l ++d++g++W +++++  +++s++yvl+ G
  DCAR_028123 505 FEKVLTASDAGKIGRLVLPKKCAEVYlpPISNPEGIPLPVQDLKGEEWVFQFRFwpNNNSRMYVLE-G 571
                  99*********************999**666668889***************9989999999**98.3 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF502495.57E-5123213IPR012340Nucleic acid-binding, OB-fold
Gene3DG3DSA:2.40.330.108.7E-19501576IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.62E-14502570IPR015300DNA-binding pseudobarrel domain
CDDcd100171.27E-15503571No hitNo description
PfamPF023628.8E-9505571IPR003340B3 DNA binding domain
SMARTSM010190.0035505595IPR003340B3 DNA binding domain
PROSITE profilePS5105013.088723773IPR011124Zinc finger, CW-type
PfamPF074968.2E-10728770IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1003 aa     Download sequence    Send to blast
MSLPVRVCNF YIYILSVSDC NQEEVVEGNV YVFQNFQVRD STGKLKPVST KLCIRLLSST  60
TIEEQSNDHL IPRYKFEFMD FGDINEESKK VVGDENPEYA IDNVSVGTLP STRVFFNLDI  120
EPVVEFRNRF RILVLADDKT HACNVLLFDR IVKRLLGTTV TNILSEMKKS PDSGSVKEMY  180
KRIIGKEISA KILLSEGNKS GESNIYEAVD LFDPTMLASS SGEKSPETNT SAFSHPGVVP  240
GIELFQTPGS ASSVSKKIKT QIHCGCIVSF HMFVLLDAGG IECITCTKKS FILTPNPAWP  300
PPSLLLPGLP ERIKDLSAKN WSSIAASGPV PWRQAPSLFN PELHPKMPSE FNIPTSKKLS  360
DSMDKKENLV FSGRLMNGGL KGDASQISEN GSKCEDQQSP YVNDNPHSAI LKNEPSSPNP  420
DLTLNTTSKS EIAEHSSISV SQAQPPAPLP AAANYNGVDS FGEGQAQIGR PQDRNQLLPR  480
YWPKITEQEL QQISGDSNSV ITPLFEKVLT ASDAGKIGRL VLPKKCAEVY LPPISNPEGI  540
PLPVQDLKGE EWVFQFRFWP NNNSRMYVLE GKKGPVNTRD KASAHGDSTA KKSKPGEVTA  600
QHNSKRNSVS YSPLTMNKAN LADSGRKSNK VVENKCDAKV KPAAKPDIPI KRKNSILGSK  660
SKRLRIENED MMELKLTWEQ AQGLFHPPPN NVPKIVLIDG CEIEEFEEPP IIGRPTIVAK  720
NNLGEIIQWA QCEDCFKWRK VPGYAILPSR WTCSENLWDP KRSLCSADQE LTLDELEDLL  780
PSAGAKKMKA EKEDPDSLEA LEGLDALANV AIQEDGDAYA SSSLHTTTTK HPRHRPGCSC  840
IVCIQPPSGK GHKHKQTCTC NLCMTVKRRF KTLMLRREIK QSEKAETARQ KLQQPEQSGD  900
DDIQMFCDAG NSSSSHNLVN GEGSNNDQSK KKLSNQLDLN IHPEREEDLS PVLNSGSITR  960
MIQDGTGGPQ KVKKISRSGG NLVVSQPPPP EVGVENYSTD VA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A2e-40483571290B3 domain-containing transcription repressor VAL1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017221206.10.0PREDICTED: B3 domain-containing protein Os07g0563300-like isoform X2
TrEMBLA0A175YLJ40.0A0A175YLJ4_DAUCS; Uncharacterized protein
STRINGXP_006449227.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA71282126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30470.11e-104high-level expression of sugar-inducible gene 2