PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_028285
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family NF-YA
Protein Properties Length: 311aa    MW: 34385 Da    PI: 8.9094
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_028285genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA101.96.1e-32173229158
    CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                  d p+YVNaKQy++I++RRq Rakle+++kl  ksrkpylheSRh+hA++R Rg+gGrF
  DCAR_028285 173 DGPIYVNAKQYNGIMRRRQVRAKLEAQNKL-LKSRKPYLHESRHRHAVNRVRGTGGRF 229
                  57****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005215.7E-35171232IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115235.661172232IPR001289Nuclear transcription factor Y subunit A
PfamPF020457.2E-28175229IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006165.9E-23175197IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860177197IPR018362CCAAT-binding factor, conserved site
PRINTSPR006165.9E-23206229IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MPHIPFTTTT SWWNPQGQQF FQPLSKSLSL KVGSPREASE EGNNGSETGH HPQDLDSSST  60
QSHSTTDQSH QEVSAIDYNG PHDQYFSSDS AAQGRSYSKH VEGQVKPVMV FSNPCFGIDR  120
SQAELNPSMV HIPYAYGDPY VNGLYTAYGP QVTPQVVGVP PVRVPLPIEL ADDGPIYVNA  180
KQYNGIMRRR QVRAKLEAQN KLLKSRKPYL HESRHRHAVN RVRGTGGRFL SKSEQSNPAH  240
PFNHNLGSRP VNQAETGKGE TSKDSSSSIM CVDNNNESSF QHPNLMYMSS NTGRGFMYEG  300
TPQRSSPVVR *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A2e-21173238267NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017221384.10.0PREDICTED: nuclear transcription factor Y subunit A-7-like
TrEMBLA0A175YM130.0A0A175YM13_DAUCS; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA50092338
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72830.15e-27nuclear factor Y, subunit A3