PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_028418
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family MYB_related
Protein Properties Length: 113aa    MW: 13008.8 Da    PI: 10.562
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_028418genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.52.7e-073378244
                     SSS-HHHHHHHHHHHHHTTTT....-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGgg....tWktIartmgkgRtlkqcksrw 44
                     + WT+eE+ +l d  +++G++    + ++Ia  +  ++t  ++ +r 
      DCAR_028418 33 MEWTPEEQAILEDNLARYGSEtnivRYAKIAVLLH-NKTVRDVALRC 78
                     58*********************************.9**99998885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.69E-72689IPR009057Homeodomain-like
SMARTSM007173.8E-43184IPR001005SANT/Myb domain
PfamPF002491.9E-63379IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.4E-63492IPR009057Homeodomain-like
CDDcd001673.79E-53479No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 113 aa     Download sequence    Send to blast
MANPYNEPGR PVNGNSRQQE STPVLQHSSG ISMEWTPEEQ AILEDNLARY GSETNIVRYA  60
KIAVLLHNKT VRDVALRCRW MNKKENSKRR KEDQSLSKKN KDRKVRLLLH LP*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017220757.16e-71PREDICTED: uncharacterized protein LOC108197605
TrEMBLA0A175YMD63e-77A0A175YMD6_DAUCS; Uncharacterized protein
STRINGXP_008347833.14e-38(Malus domestica)