PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_028477
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family ERF
Protein Properties Length: 197aa    MW: 21734.7 Da    PI: 4.3088
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_028477genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP250.36.1e-162069255
          AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                 +y+GVr +k +g++v+eIr p++   r r++lg++++a eAa+a +aa  +l+g
  DCAR_028477 20 KYTGVRLRK-WGKYVSEIRLPNS---RERIWLGSYDSAVEAARAFDAAQFCLRG 69
                 8******99.**********933...5*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000189.63E-262079No hitNo description
PROSITE profilePS5103219.2962077IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.1E-272078IPR001471AP2/ERF domain
SMARTSM003802.7E-282083IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-192079IPR016177DNA-binding domain
PfamPF008475.7E-92069IPR001471AP2/ERF domain
PRINTSPR003672.2E-72132IPR001471AP2/ERF domain
PRINTSPR003672.2E-74359IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
MDINVTRESS GQAGHDQQVK YTGVRLRKWG KYVSEIRLPN SRERIWLGSY DSAVEAARAF  60
DAAQFCLRGP SAKFNFPDNP PDIPGGRSLT PGQIQVEAAR FAHSAPPQCS ANNPQAEAHQ  120
AEAPSNTGQV GVENSLLDEF RTMSWETESV SEFGYFQGFD DFENELLLSG PNYGMDEVEE  180
TGDDSFTTHG SFLWNF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-1520771472Ethylene-responsive transcription factor ERF096
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017222267.11e-146PREDICTED: ethylene-responsive transcription factor ERF017-like
TrEMBLA0A175YLS91e-144A0A175YLS9_DAUCS; Uncharacterized protein
STRINGXP_008344047.11e-54(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA19392466
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19210.13e-50ERF family protein