PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_028691

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

bHLH

Protein Properties

Length: 337aa MW: 37127.3 Da PI: 6.123

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_028691	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	11	0.00077	197	233	14	55
HHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 14 driNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++ +++ L +++ + +K + a++L +A+ YI+ Lq DCAR_028691 197 EKLGDRITALHQMVSPF-----GKTDTASVLLEAIGYIRFLQ 233 56668888888888887.....8******************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	10.493	183	232	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.7E-9	195	243	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.70E-5	195	237	No hit	No description
Gene3D	G3DSA:4.10.280.10	3.8E-7	197	239	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 337 aa Download sequence Send to blast
MNRGVLQSAP VQQVMAAGSP NWWNINNMRP VPQPPQGSAP FFSPPQYAPP WQDNNQEAPE 60 SWSQLVMGGL ADEEEKSGVS HLQHVLKLDK WEEQLLQQHH QQQQQQQQQA VTIGSISSLH 120 GDIKRENSSN SYHMFGSENN MNAQFQAAIE PTWPQLMPVS SPKSCVTSLG SNMLDFSNSK 180 ADGRHLQPDR SSEVRKEKLG DRITALHQMV SPFGKTDTAS VLLEAIGYIR FLQSQIEALS 240 LPYLGSGSGT NMRQQHQHSV QGERNCLFPD DPGQLLNDNN GLKRKTAPDQ KPDEETKKDL 300 KSRGLCLVPV SCTLQVESDN GADYWGPAAL GGGGFH*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017220116.1	0.0	PREDICTED: transcription factor bHLH68-like
Swissprot	Q8S3D1	2e-78	BH068_ARATH; Transcription factor bHLH68
TrEMBL	A0A175YKK0	0.0	A0A175YKK0_DAUCS; Uncharacterized protein
STRING	VIT_11s0016g03560.t01	1e-131	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1519	22	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29100.1	1e-77	bHLH family protein

Link Out ? help Back to Top
Phytozome	DCAR_028691

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Le Hir R, et al. AtbHLH68 transcription factor contributes to the regulation of ABA homeostasis and drought stress tolerance in Arabidopsis thaliana. Physiol Plant, 2017. 160(3): p. 312-327 [PMID:28369972] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]