PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_028697
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family CPP
Protein Properties Length: 591aa    MW: 63798.5 Da    PI: 7.3707
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_028697genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR452.1e-14108147242
          TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkeek 42 
                  ++k+CnCk+s+Clk+YCeCfa+g +C+  C+C +C+N+ e+
  DCAR_028697 108 KQKQCNCKHSRCLKLYCECFASGIYCDG-CNCVHCHNNVEN 147
                  89**************************.********9875 PP
2TCR50.93.1e-16192231140
          TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                  k++kgC+Ckks ClkkYCeCf+a+  Cse+CkC dCkN e
  DCAR_028697 192 KHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFE 231
                  589***********************************65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011142.2E-16107147IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163436.42108232IPR005172CRC domain
PfamPF036381.4E-11109144IPR005172CRC domain
SMARTSM011148.4E-20192233IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.1E-12195230IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 591 aa     Download sequence    Send to blast
MSEMEQGEGV SKKAPQSEPS SKRQLDFGGV SGMAESSQVL AGSQLRPVVQ QLPVRPVVVQ  60
TASITQSLLM QMQAQGQAAH PPMRPSKPDS PKARPKQNSE VKDGTPKKQK QCNCKHSRCL  120
KLYCECFASG IYCDGCNCVH CHNNVENEPA RREAVEATLE RNPNAFRPKI ASSPHATRDN  180
REEAGEVLIL GKHNKGCHCK KSGCLKKYCE CFQANILCSE NCKCMDCKNF EGSEERQALF  240
HGDHANNIAF MHQAANAAIT GAIGSSGYGP PVFKKRKGQE LFFGSTAKDL STHRQPHIQQ  300
TNFFRGPAPS SLSTNPGSGV SNCAAVGPSK SYRSLLEGII QPEDLKQLCS VLVVYTGETG  360
KIIEDRNAME KQAEDRKENS LTSSNQERCQ NQREFDAERS VIDDCSSANQ IEKVIPDESS  420
SDGADASNGR PMSPGTLALM CDEQDTLFAA SQSGVLGNGG NASSQLPQGE GVTETYVEQE  480
RIILTKFRDC LNKLITLGQI KERKCSTMAQ TESDDKIDAF SNATANASTG SIHHPGLFNG  540
APAHSMLPPV LIPQTVNPAS VSAASNNDLQ SRIPFTSENG TSKQKSEKSL *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A2e-311002412132Protein lin-54 homolog
5fd3_B2e-311002412132Protein lin-54 homolog
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in development of both male and female reproductive tissues. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00045PBMTransfer from AT4G29000Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017220490.10.0PREDICTED: protein tesmin/TSO1-like CXC 5
SwissprotQ9SZD10.0TCX5_ARATH; Protein tesmin/TSO1-like CXC 5
TrEMBLA0A175YL630.0A0A175YL63_DAUCS; Uncharacterized protein
STRINGXP_006451190.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24012455
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29000.11e-168Tesmin/TSO1-like CXC domain-containing protein