PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_028824
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family MYB_related
Protein Properties Length: 275aa    MW: 31457.8 Da    PI: 5.0672
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_028824genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.81.2e-083984346
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46
                     +W++eE + + da +++ ++   +W+ +a++++ g+t  +++  ++ 
      DCAR_028824 39 KWSQEENKMFEDALALFDKDtpdRWHNVAAMIP-GKTVSDVIKQYRE 84
                     8********************************.*******999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.5E-43183IPR009057Homeodomain-like
PROSITE profilePS500906.4233286IPR017877Myb-like domain
SMARTSM007174.2E-103688IPR001005SANT/Myb domain
SuperFamilySSF466892.24E-113892IPR009057Homeodomain-like
CDDcd001671.10E-73985No hitNo description
PfamPF002494.1E-73984IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MSTYVTQLYP DYMKGTKIFS SSSYLGNSKW FPEEIKDTKW SQEENKMFED ALALFDKDTP  60
DRWHNVAAMI PGKTVSDVIK QYRELEEDVS DIEAGLIPEP EYACDSFALE WTNHQGFDGM  120
NQFYVRCGKR STLTRPTDQE RKKGVPWTEE EHRQLSGGKD KRRSSIHDIT MVNLIEAKST  180
STDSGQQHSD TNARLKDHHK WNLSDKGSVM DFNQANSSQL TTPRPDTSSQ ALSVQDYNLQ  240
TGILQRPQFG YYDSLSEMQQ CSTYDRINLV GTLF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A4e-17401021173RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017221962.10.0PREDICTED: transcription factor DIVARICATA-like
SwissprotQ8S9H77e-56DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A175YJ500.0A0A175YJ50_DAUCS; Uncharacterized protein
STRINGXP_009370204.11e-83(Pyrus x bretschneideri)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38090.15e-65MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]