PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_029030

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

Protein Properties

Length: 447aa MW: 50077.9 Da PI: 7.287

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_029030	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	58.2	1.5e-18	98	188	1	99
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 f+k++++s+v rl lpkkf+++h +++++t++l des + + k+ +k++ l++GW++F a++L+e+D++vF+l+++ +f +v ++r DCAR_029030 98 FVKKMLTSHVAGCFRLGLPKKFTRRHL--PKQDVTVVLVDESEGEHKTKYLAEKSG----LSGGWRGFSVAHNLQEKDVLVFHLIQECRF--KVYIVR 187 89**********************5..34889************656665....9**********************99888..888877 PP S CS B3 99 k 99 + DCAR_029030 188 A 188 5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	7.3E-21	92	189	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	6.28E-23	93	189	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	6.25E-27	96	187	No hit	No description
SMART	SM01019	1.6E-25	98	189	IPR003340	B3 DNA binding domain
Pfam	PF02362	7.4E-16	98	188	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	11.857	98	189	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 447 aa Download sequence Send to blast
MSEEKSSKAL TPIPQAQPSS KNNKALEPKK KIFKNRDGDG LHASKHKKVV SFDLDKQIVS 60 YQPKAEASDS RGSDPKVSSP MDRAREIQAN LASNFPSFVK KMLTSHVAGC FRLGLPKKFT 120 RRHLPKQDVT VVLVDESEGE HKTKYLAEKS GLSGGWRGFS VAHNLQEKDV LVFHLIQECR 180 FKVYIVRANS LSEVDGAIDL LNLCACERKT GSDHHEEGLK MTAVAPEEHL KQYSLVHSAQ 240 EKDMVALSYN VDVAADNSGM NSDNSGSDDF YGLWIAHSVT DFKDVKDFEN FSITVDRIIL 300 DNQIPHDRRE KYYELCCSQN SYLHDQLIDE KLSLHLVVGI ILETVSISDA INSSKPGSYK 360 DLKAWDNTLK SFEILGMKVG FLRAKIDKLL TLSSESEDAL QRKIVEKAKA KEELKALEIR 420 RSSLKEVIEN LAHEIEAIKI KAQTEH*

Sequence ? help Back to Top

Protein Sequence Length: 447 aa Download sequence Send to blast

MSEEKSSKAL TPIPQAQPSS KNNKALEPKK KIFKNRDGDG LHASKHKKVV SFDLDKQIVS  60
YQPKAEASDS RGSDPKVSSP MDRAREIQAN LASNFPSFVK KMLTSHVAGC FRLGLPKKFT  120
RRHLPKQDVT VVLVDESEGE HKTKYLAEKS GLSGGWRGFS VAHNLQEKDV LVFHLIQECR  180
FKVYIVRANS LSEVDGAIDL LNLCACERKT GSDHHEEGLK MTAVAPEEHL KQYSLVHSAQ  240
EKDMVALSYN VDVAADNSGM NSDNSGSDDF YGLWIAHSVT DFKDVKDFEN FSITVDRIIL  300
DNQIPHDRRE KYYELCCSQN SYLHDQLIDE KLSLHLVVGI ILETVSISDA INSSKPGSYK  360
DLKAWDNTLK SFEILGMKVG FLRAKIDKLL TLSSESEDAL QRKIVEKAKA KEELKALEIR  420
RSSLKEVIEN LAHEIEAIKI KAQTEH*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017226027.1	0.0	PREDICTED: B3 domain-containing protein Os01g0234100-like isoform X1
TrEMBL	A0A175YD99	0.0	A0A175YD99_DAUCS; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3023	23	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19184.1	5e-38	B3 family protein

Link Out ? help Back to Top
Phytozome	DCAR_029030