PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_029047
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family B3
Protein Properties Length: 166aa    MW: 19805 Da    PI: 4.2056
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_029047genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B351.51.9e-1612100197
                  EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                  ffk ++ +d  ++    l ++f++e++++ + +    ++d++ + W v++   ++ ++ ++++GW +Fv++++++ gDf+vF++dg s f   v++f
  DCAR_029047  12 FFKPFVAEDRERR---LLIRPFFSEIMKD-RLPNNAFIRDRKENFWPVEV--LQREKKKFFEAGWTKFVQDKNVQYGDFLVFEYDGGSFF--DVRIF 100
                  6777766666554...5778999999766.68999***************..55555667999*********************997766..77776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.1E-198104IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.63E-208105IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.3239103IPR003340B3 DNA binding domain
CDDcd100171.07E-1510100No hitNo description
PfamPF023625.7E-131299IPR003340B3 DNA binding domain
SMARTSM010192.2E-1312103IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 166 aa     Download sequence    Send to blast
MASRKLKKIP EFFKPFVAED RERRLLIRPF FSEIMKDRLP NNAFIRDRKE NFWPVEVLQR  60
EKKKFFEAGW TKFVQDKNVQ YGDFLVFEYD GGSFFDVRIF GVTACEKEFS VEGFEADEME  120
EEEDEKGENY VDEEGHDKEM EDEEDEHKAD NRVEMDDDEL ALLEN*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017224783.11e-113PREDICTED: putative B3 domain-containing protein At5g66980
TrEMBLA0A175YCU31e-113A0A175YCU3_DAUCS; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10912264
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66980.11e-18B3 family protein