PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_029117

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

LBD

Protein Properties

Length: 211aa MW: 22807.7 Da PI: 7.3434

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_029117	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	97.6	1.3e-30	2	105	1	98
DUF260 1 aCaaCkvlrrkCakdCvlapyf......paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 +C++C+vlr++C+++C+l++ + p++q++++ +v+k+FG++ ++++l+a+pe +r+++++sl++eA+ r+ +Pv+Gavg++++++++++q+++ DCAR_029117 2 SCNGCRVLRKGCNENCILRQSLqgidhsPQAQANATVFVAKFFGRAGLMSFLSAVPELQRPALFQSLLFEACGRTVNPVNGAVGLLWTGNWHVCQAAV 99 6************************************************************************************************* PP DUF260 93 elallk 98 e++l++ DCAR_029117 100 ETVLRG 105 998876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	18.947	1	108	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	4.8E-26	2	102	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 211 aa Download sequence Send to blast
MSCNGCRVLR KGCNENCILR QSLQGIDHSP QAQANATVFV AKFFGRAGLM SFLSAVPELQ 60 RPALFQSLLF EACGRTVNPV NGAVGLLWTG NWHVCQAAVE TVLRGGELSS SSEFFAGAPA 120 PGSDVIDLFR SSSQELNESE RYNFDHDVAR AHLSNLDLSL TSNLPAEIFS GGRAKRRPPS 180 EESETTTFGS GVVCNNQSLR GERKLLRLFI *

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017224499.1	1e-153	PREDICTED: LOB domain-containing protein 37-like
Swissprot	Q9SZE8	7e-64	LBD39_ARATH; LOB domain-containing protein 39
TrEMBL	A0A175YD13	1e-151	A0A175YD13_DAUCS; Uncharacterized protein
STRING	XP_009625187.1	2e-79	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA966	24	90

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G49940.1	2e-65	LOB domain-containing protein 38

Link Out ? help Back to Top
Phytozome	DCAR_029117