PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_029377
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family MYB_related
Protein Properties Length: 718aa    MW: 82111.1 Da    PI: 6.3421
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_029377genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.58.5e-104385247
                     SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                       WT eEde+l++  k++++  W+tIa  +g  Rt+ qc +r+  +
      DCAR_029377 43 TEWTREEDEKLLQWTKLMPSQ-WRTIAPNVG--RTASQCLERYERL 85
                     68******************9.********8..*********9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500905.03134IPR017877Myb-like domain
SMARTSM0071734338IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.7E-42748IPR009057Homeodomain-like
SuperFamilySSF466898.69E-152888IPR009057Homeodomain-like
PROSITE profilePS5129417.6053790IPR017930Myb domain
CDDcd116591.66E-243889No hitNo description
SMARTSM007179.5E-114188IPR001005SANT/Myb domain
PfamPF139211.0E-84593No hitNo description
Gene3DG3DSA:1.10.10.601.6E-104987IPR009057Homeodomain-like
PfamPF118313.3E-20321558IPR021786Pre-mRNA splicing factor component Cdc5p/Cef1
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 718 aa     Download sequence    Send to blast
MMKGGAWKNT EDEILKTGVM KYGKNEQNKA RWNEWLDPSI VKTEWTREED EKLLQWTKLM  60
PSQWRTIAPN VGRTASQCLE RYERLLDAAC AKDGNFEAGD DPRKLHAGEF DPNAESRPAR  120
PDPVDMDQDK IEMLSEARAR LANTRGKKAM RKAREKQLDE ARRLAVLQKR RELKGAGISD  180
GHKKRKRNGI DYNAEIPFEK QPPLGFYDVA DERQIVEQLK FPTTVEELEG EKRCDKEARL  240
RRQEAARNFI LQRHNAPSAT PQANKCNGPE ADTKRAKLNL PTLQISEHEL EHIAKFRLPS  300
LSKELAEGSG ATCDLLIDYV QTPCQGATSI RTPQRTPASK HDAIMIEAEN QAKLKVSQTP  360
LLGGENPELQ HSDCMGVTPK KREIQASNIL TPSVTSLLDL QVSIILQPIP QDNDEPEEKM  420
EEDISDRIAS EKAEDEAKMQ DLHKRSEVLQ RELPRPSPAS LQLLKNSLLK TTVGNCSFVP  480
PTLIEQADVM IKKELLSLLE HDILNYSNNG KVQKEKEDAT RTAKENSGFL PLTDQFELDE  540
LKEADYYLMK ECMEMSRESE LFDKFVEEHK TRLNEMMYFT TRKGYNLSSV VGNLEKVTAL  600
QAEYENVRRW MDTNDKKVEK FEKRINLLTN GYLQRSRNLW SQIEATFKLL NNAETELKCF  660
RALSNQEQLA ALHRVSTLCG EVEKQKELEQ TLQKRYGYVL SAQVRIQEEY AAKQLAL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5mqf_L1e-13817005792Cell division cycle 5-like protein
5xjc_L1e-13817005792Cell division cycle 5-like protein
5yzg_L1e-13817005792Cell division cycle 5-like protein
5z56_L1e-13817005792Cell division cycle 5-like protein
5z57_L1e-13817005792Cell division cycle 5-like protein
5z58_L1e-13817005792Cell division cycle 5-like protein
6ff4_L1e-13817005792Cell division cycle 5-like protein
6ff7_L1e-13817005792Cell division cycle 5-like protein
6icz_L1e-13817005792Cell division cycle 5-like protein
6id0_L1e-13817005792Cell division cycle 5-like protein
6id1_L1e-13817005792Cell division cycle 5-like protein
6qdv_O1e-13817005792Cell division cycle 5-like protein
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1168186KRRELKGAGISDGHKKRKR
Functional Description ? help Back to Top
Source Description
UniProtComponent of the MAC complex that probably regulates defense responses through transcriptional control and thereby is essential for plant innate immunity. Possesses a sequence specific DNA sequence 'CTCAGCG' binding activity. Involved in mRNA splicing and cell cycle control. May also play a role in the response to DNA damage. {ECO:0000250|UniProtKB:Q99459, ECO:0000269|PubMed:17298883, ECO:0000269|PubMed:17575050, ECO:0000269|PubMed:8917598}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017258014.10.0PREDICTED: cell division cycle 5-like protein
SwissprotP929480.0CDC5L_ARATH; Cell division cycle 5-like protein
TrEMBLA0A175YDP40.0A0A175YDP4_DAUCS; Uncharacterized protein
STRINGGLYMA20G36600.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA61392431
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09770.10.0cell division cycle 5
Publications ? help Back to Top
  1. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]
  2. Li S, et al.
    MAC3A and MAC3B, Two Core Subunits of the MOS4-Associated Complex, Positively Influence miRNA Biogenesis.
    Plant Cell, 2018. 30(2): p. 481-494
    [PMID:29437988]