PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_029398
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family NF-YB
Protein Properties Length: 110aa    MW: 12330.9 Da    PI: 7.4402
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_029398genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB301.2e-09329228
        NF-YB  2 reqdrflPianvsrimkkvlPanakis 28
                  eqdr+lPianv+rimk++lP  ak s
  DCAR_029398  3 DEQDRLLPIANVGRIMKQILPPAAKAS 29
                 59**********************987 PP
2NF-YB62.49.5e-2026754897
        NF-YB 48 seasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelegek 97
                 ++asd+c++e+rkt+ngdd++wal++lG+++++e+  +yl+kyre+e+e+
  DCAR_029398 26 AKASDRCHKENRKTVNGDDVYWALCSLGLDNHAEATGKYLHKYREFERER 75
                 579********************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.101.2E-6327IPR009072Histone-fold
SuperFamilySSF471135.94E-20583IPR009072Histone-fold
PfamPF008082.0E-42549IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.103.2E-172891IPR009072Histone-fold
PRINTSPR006159.9E-63250No hitNo description
PRINTSPR006159.9E-65169No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 110 aa     Download sequence    Send to blast
MGDEQDRLLP IANVGRIMKQ ILPPAAKASD RCHKENRKTV NGDDVYWALC SLGLDNHAEA  60
TGKYLHKYRE FERERALQNK ASTVTQGNSE ECRPTTDPSS LEITVMDRK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B8e-21470392Transcription factor HapC (Eurofung)
4g92_B8e-21470392Transcription factor HapC (Eurofung)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028060827.11e-43nuclear transcription factor Y subunit B-4-like
SwissprotO040273e-35NFYB4_ARATH; Nuclear transcription factor Y subunit B-4
TrEMBLA0A175YE716e-77A0A175YE71_DAUCS; Uncharacterized protein
STRINGcassava4.1_032284m4e-40(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09030.11e-37nuclear factor Y, subunit B4
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]