PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_029419
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family B3
Protein Properties Length: 218aa    MW: 24752.1 Da    PI: 6.3566
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_029419genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3482.2e-15241061199
                  HHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
           B3  11 lksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                   +s+ l +p +f ++ +g+ +++    l  +sg++W v++  + +++   l++GW eFvk+  L egDf+vF+++g+ +f  +v++ +k
  DCAR_029419  24 QSSDHLKIPPTFNKKLEGVFPSD---YLLESSGKTWHVTV-KEVHDNLLQLENGWPEFVKDSALAEGDFLVFSYIGNLKF--HVGIWDK 106
                  466779*******9999996664...67778*********.466777799*************************98777..9999876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.6E-1813109IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.68914107IPR003340B3 DNA binding domain
SuperFamilySSF1019361.26E-1814109IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.1E-916107IPR003340B3 DNA binding domain
PfamPF023622.2E-1225106IPR003340B3 DNA binding domain
CDDcd100171.68E-925103No hitNo description
Gene3DG3DSA:2.40.330.105.3E-10127216IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.0063128211IPR003340B3 DNA binding domain
SuperFamilySSF1019365.49E-9128216IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508638.134164217IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MKALTEANIY DASPEFRIIF FPAQSSDHLK IPPTFNKKLE GVFPSDYLLE SSGKTWHVTV  60
KEVHDNLLQL ENGWPEFVKD SALAEGDFLV FSYIGNLKFH VGIWDKNGCR RKIQDSNAGE  120
IQNICNTFQV NIRPAYLTYV NIPRDLAKLL NKKTKCTLKI AEDSWVVNFT GDVNDKPRFG  180
GGLRQFCMDN EVKADDILTF QLISEHDNSF TVDISRK*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017226152.11e-162PREDICTED: B3 domain-containing protein At3g06220-like
TrEMBLA0A175YDU01e-161A0A175YDU0_DAUCS; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA126331320
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66980.13e-13B3 family protein