PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_029463

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

ERF

Protein Properties

Length: 202aa MW: 22927.3 Da PI: 4.3317

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_029463	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	59.6	7.5e-19	90	141	2	56
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 +y+GVr+++ +g+++AeIr p ++g +r++lg+++t+e+Aa a+++a+ k++g+ DCAR_029463 90 RYRGVRRRP-WGKFAAEIRNPAKRG--ARIWLGTYDTPEDAALAYDRAAFKIRGA 141 8******.******97765..***********************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00018	3.42E-32	89	148	No hit	No description
PROSITE profile	PS51032	24.408	90	148	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	4.0E-31	90	149	IPR001471	AP2/ERF domain
SMART	SM00380	9.1E-36	90	154	IPR001471	AP2/ERF domain
Pfam	PF00847	6.6E-14	90	140	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	7.85E-23	90	149	IPR016177	DNA-binding domain
PRINTS	PR00367	2.3E-10	91	102	IPR001471	AP2/ERF domain
PRINTS	PR00367	2.3E-10	114	130	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 202 aa Download sequence Send to blast
MTSYNLPDPD FSALESIRQH LLEDADNFDT ITSSDPLVYE RNLSFGSTDS GGTDSVEDYT 60 MEWMDMLRDA DAKQDFVQEL SAEKQPEWKR YRGVRRRPWG KFAAEIRNPA KRGARIWLGT 120 YDTPEDAALA YDRAAFKIRG ARAKVNFPKL LVPDLSQKFD VDANRLTSEP ESSTSYNHSP 180 GENLEEMFTL TDEDLLLIDS L*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1gcc_A	1e-28	89	148	1	60	ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A	1e-28	89	148	4	63	ATERF1
3gcc_A	1e-28	89	148	4	63	ATERF1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017225948.1	1e-147	PREDICTED: ethylene-responsive transcription factor 13-like
TrEMBL	A0A175YF08	1e-145	A0A175YF08_DAUCS; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA21	24	1165

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44840.1	2e-33	ethylene-responsive element binding factor 13

Link Out ? help Back to Top
Phytozome	DCAR_029463