PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_029489

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

Trihelix

Protein Properties

Length: 330aa MW: 36676.4 Da PI: 8.1933

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_029489	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	58.7	1.5e-18	35	125	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm...rergferspkqCkekwenlnkrykkikegekkr..tsessstcpyfdqle 86 +W+++e+ aLi+ +re++ +lrrg+l++ +W+ev++ + + ++++qC++k+e+l+kry+++ ++ + +++ s++++f++++ DCAR_029489 35 CWSHDETVALIDSYREKWYSLRRGNLRACHWQEVADSValrSPNEPGKTSVQCRHKMEKLRKRYRNEIQRLASAvgRNRYNSSWVHFERMD 125 8***********************************8665555679*****************99998556888899****97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	7.6E-20	34	125	No hit	No description
PROSITE profile	PS50090	6.11	36	95	IPR017877	Myb-like domain
SMART	SM00595	2.6E-7	43	132	IPR006578	MADF domain

Sequence ? help Back to Top
Protein Sequence Length: 330 aa Download sequence Send to blast
MATPSLSPQD LPNPPLAPPA NPSGPTNPRR LPPPCWSHDE TVALIDSYRE KWYSLRRGNL 60 RACHWQEVAD SVALRSPNEP GKTSVQCRHK MEKLRKRYRN EIQRLASAVG RNRYNSSWVH 120 FERMDCMEKG PTAVALPVNR MTKIEDDVDE DEEEEEDSDI GFYPKSVRNG YGLGGNGNVG 180 NGVNLCSWNR IPGQGNLVSP TPLAMYNKFD GYSTPKASEV PSFGGFKNGS VGRFGMGNNG 240 NEGRVESKKE SNDPAMELVG AIKALGDGFV RMERMKMDMV REVEAMRMDM EVKKTEMILE 300 SQQRILESFV NAVSEGSNKK AKRMSSPSS*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017223932.1	0.0	PREDICTED: trihelix transcription factor ASIL2-like
TrEMBL	A0A175YE11	0.0	A0A175YE11_DAUCS; Uncharacterized protein
STRING	Solyc01g088820.2.1	2e-91	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA8028	23	27

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44730.1	3e-42	Trihelix family protein

Link Out ? help Back to Top
Phytozome	DCAR_029489