PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_029563
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family B3
Protein Properties Length: 143aa    MW: 16343.5 Da    PI: 4.9966
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_029563genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B342.98.6e-14481152597
                  TT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
           B3  25 ehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                  e+g ++ +s++++++   g++W+  ++ +++s+r+ ++  W+eFv +n+LkegD +vF+l++rs++  ++kv+
  DCAR_029563  48 EFGVSPSSSVDVVFTY-LGKEWKTVVRREGCSSRTSIK--WREFVTDNHLKEGDACVFELTERSDK--LIKVR 115
                  3466677788888766.79*******878888888888..********************999888..55554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019366.47E-1422115IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.5E-1223120IPR015300DNA-binding pseudobarrel domain
CDDcd100171.54E-1127120No hitNo description
PROSITE profilePS5086310.84227122IPR003340B3 DNA binding domain
SMARTSM010193.1E-431122IPR003340B3 DNA binding domain
PfamPF023624.0E-1152114IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 143 aa     Download sequence    Send to blast
MDSSLDVPNH ITASEDEFWP LSDKPWFNVI LKSTHMRPTY TLYVPTEEFG VSPSSSVDVV  60
FTYLGKEWKT VVRREGCSSR TSIKWREFVT DNHLKEGDAC VFELTERSDK LIKVRVQILR  120
GDFPYELLNS VDGGTRDQPI IL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017225907.11e-102PREDICTED: B3 domain-containing protein Os06g0112300-like isoform X1
TrEMBLA0A175YFB21e-100A0A175YFB2_DAUCS; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA18192154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.11e-08B3 family protein