PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_029565
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family B3
Protein Properties Length: 147aa    MW: 16537.1 Da    PI: 8.3177
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_029565genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B338.52.1e-1231119597
                  -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE....EEETTEEEE-..TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
           B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy..rkksgryvlt..kGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                  l++s+v +   l++p k ++     ++ ++ ++++   g++We  +++  r  ++++ l+    W++Fv +n+LkegD +vF+l++  + + +vk++
  DCAR_029565  31 LKKSHVKQYT-LSIPAKVTKLL---PPVDVPVIFT-YCGKKWETLYTIvpR-EGRGHSLRtsIRWRKFVTDNNLKEGDACVFELSE--CSNTLVKIR 119
                  3333333333.55555555222...2222333333.478*******88652.333344441145*******************865..444588876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.8E-1623119IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.3E-1823120IPR015300DNA-binding pseudobarrel domain
CDDcd100172.47E-1625124No hitNo description
PROSITE profilePS5086311.06826126IPR003340B3 DNA binding domain
SMARTSM010191.1E-827126IPR003340B3 DNA binding domain
PfamPF023623.7E-1030119IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 147 aa     Download sequence    Send to blast
MDSFQNDPCD VEGSEDEFWP LSGKPYFSMV LKKSHVKQYT LSIPAKVTKL LPPVDVPVIF  60
TYCGKKWETL YTIVPREGRG HSLRTSIRWR KFVTDNNLKE GDACVFELSE CSNTLVKIRV  120
QILRGDFPSQ LLNGVSGLTS NNPIII*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017225892.11e-105PREDICTED: B3 domain-containing protein Os04g0386900-like
RefseqXP_017225893.11e-105PREDICTED: B3 domain-containing protein Os04g0386900-like
TrEMBLA0A175YGK01e-104A0A175YGK0_DAUCS; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA18192154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.11e-11B3 family protein