PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_029566
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family B3
Protein Properties Length: 147aa    MW: 16666.9 Da    PI: 4.5594
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_029566genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B334.43.9e-11591193794
                  EEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SEE..EE CS
           B3  37 tledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkld.gr.sefelvv 94 
                  ++ + +g++W+ +  +  ++++    +  W+eFv +n+L+egD +vF+l   + s  e +v
  DCAR_029566  59 VVLTYRGKKWKTRSFVYPRGDHtLRTSIRWREFVIDNNLQEGDACVFELAeCSeSLMEIKV 119
                  456679*******9444443331333457*******************8733334444455 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.9E-1422117IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.108.9E-1423123IPR015300DNA-binding pseudobarrel domain
CDDcd100171.63E-1225123No hitNo description
PROSITE profilePS5086311.80127125IPR003340B3 DNA binding domain
SMARTSM010190.004131125IPR003340B3 DNA binding domain
PfamPF023626.3E-942111IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 147 aa     Download sequence    Send to blast
MDSLQNDPDD IEASEDEFWP LSDKPNFNLV VKKTQLKPQY TLYVPAKMSN ELPTSDVPVV  60
LTYRGKKWKT RSFVYPRGDH TLRTSIRWRE FVIDNNLQEG DACVFELAEC SESLMEIKVQ  120
ILRGDFPSQL LLASADGTTA DKPIVL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017226173.11e-105PREDICTED: B3 domain-containing protein Os04g0386900-like
TrEMBLA0A175YEP21e-104A0A175YEP2_DAUCS; Uncharacterized protein
STRINGPGSC0003DMT4000930518e-40(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA18192154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.16e-10B3 family protein