PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_029601

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

Dof

Protein Properties

Length: 174aa MW: 19790.2 Da PI: 9.9906

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_029601	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	90.4	1.5e-28	7	65	2	60
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 + ++lkcprCds++tkfCy+nn sqPry Ck+C+r+Wt+GG lr++P ++ r+ ++ DCAR_029601 7 PPQNLKCPRCDSEETKFCYFNNSKSSQPRYRCKNCNRFWTHGGKLRDIPSNAAERRAER 65 67899**********************************************99998776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	9.0E-15	4	55	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	7.3E-27	9	65	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	24.046	11	65	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	13	49	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 174 aa Download sequence Send to blast
MEEMMKPPQN LKCPRCDSEE TKFCYFNNSK SSQPRYRCKN CNRFWTHGGK LRDIPSNAAE 60 RRAERARDSF ISTISSPPTV TYAAAEIDRA RPLYLTRPRP NQPRLEFVRT DINSLSITKS 120 HAAPKYVQVQ KYHVQPNLSV FQASYGQGVP DRHYMGGSTS DPSRSSSGAW FSY*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017225011.1	1e-129	PREDICTED: dof zinc finger protein DOF4.4-like
TrEMBL	A0A175YFM8	1e-127	A0A175YFM8_DAUCS; Uncharacterized protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G21050.1	5e-21	Dof-type zinc finger domain-containing protein

Link Out ? help Back to Top
Phytozome	DCAR_029601