PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_029605
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family MYB_related
Protein Properties Length: 676aa    MW: 74313.6 Da    PI: 10.5432
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_029605genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.21.9e-081747435
                     S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS CS
  Myb_DNA-binding  4 WTteEdellvdavkqlGggtWktIartmgkgR 35
                     WTt+Ed+ll  av+++G  +W+t+a +++  R
      DCAR_029605 17 WTTWEDLLLSSAVRRYGLSDWSTVATELQ-SR 47
                     ***************************99.66 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.562966IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.603.7E-6950IPR009057Homeodomain-like
SuperFamilySSF466893.35E-61150IPR009057Homeodomain-like
PfamPF002492.1E-61747IPR001005SANT/Myb domain
CDDcd001678.61E-51747No hitNo description
SuperFamilySSF473705.63E-17272390IPR001487Bromodomain
Gene3DG3DSA:1.20.920.101.9E-16280390IPR001487Bromodomain
SMARTSM002976.5E-15283392IPR001487Bromodomain
CDDcd043691.21E-15291385No hitNo description
PfamPF004393.0E-11299376IPR001487Bromodomain
PROSITE profilePS5001411.823302373IPR001487Bromodomain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 676 aa     Download sequence    Send to blast
MTNKIEGQNN NQSQSIWTTW EDLLLSSAVR RYGLSDWSTV ATELQSRVNN NQFTPQFCAD  60
KFSDLKRRFD VSGDGENVAG DGENVAVPWL DELKNLRIKE LKEIVQGRGV SIQSLNLKVK  120
RLEEERERSG KEDGSDKQKP DLEAERSENV QNDENDVVMA EKDEKIGEVA GDSVSGDRSE  180
RENRSVNESN STEKKRMETG PVRTGGDKPV GPVQADSWND SSKPSDEKKA ENESVKVVES  240
AGGESKGGKD SNEAQSSASL TRKSRSSTSN SGGGDERMTS KTTSRDSVKN TEQLNRFLNS  300
IRSSKNGPVF EARLQSQKTE KYNSIIRQHV DLETIQSRVN NGSYSSCTTK FYLDLLLLFN  360
NAIVFYPKSS PESTAAVDLR KFVLKGLNKK RGAKQSNPSP ESGPTTLLKI KSDPERSDSL  420
LAKQKNSAPF IVCRKRSSIT SKPSASNKPQ KPEDKQVLDT KQPPARPSSS AKPSSSSPNE  480
EESLLKLNPK EKPVTGARSM RRSSSARINN ASAKNTANTT VKTPVTSPSM NPGSSTAKGS  540
EGSKADNKKK TNPLLVKKRE AADFLKRIKK SSPAKGTLLD TLKNLPENSN SSSKRETREQ  600
PKKKVVDERK ESTRGRQKGR GGGKRAKEEE ASQSKRNVGR PPKRGRDDGV ASGKRGKEIV  660
EEEVVAKRPN KRSKR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1379390RKFVLKGLNKKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017227266.10.0PREDICTED: uncharacterized protein LOC108203064
TrEMBLA0A175YGP30.0A0A175YGP3_DAUCS; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA42682136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44430.12e-68DNA-binding bromodomain-containing protein