PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_029746
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family ERF
Protein Properties Length: 185aa    MW: 21009.5 Da    PI: 5.6681
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_029746genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.82.3e-17104154255
          AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                  +++GVr+++ +g+++AeIr p   + k +r +lg+++t+ eAa a+++a+  ++g
  DCAR_029746 104 RFRGVRRRP-WGKFAAEIRNP---NkKGARLWLGTYDTPREAALAYDRAAYDIRG 154
                  69*******.**********9...4345**********************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003805.2E-33104168IPR001471AP2/ERF domain
SuperFamilySSF541715.1E-22104163IPR016177DNA-binding domain
PROSITE profilePS5103223.709104162IPR001471AP2/ERF domain
PfamPF008472.3E-13104154IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.2E-30104163IPR001471AP2/ERF domain
PRINTSPR003673.7E-12105116IPR001471AP2/ERF domain
CDDcd000182.43E-24112164No hitNo description
PRINTSPR003673.7E-12144164IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    Send to blast
MMMEESLLDF DLSLLESIHH QLINDSDFSD IFLPISPCST LNYHPTSSFS SFSSVENCID  60
ETFKADESFQ TILKPSVQEE EEKQADVAGN ACEDDSHRPP EPRRFRGVRR RPWGKFAAEI  120
RNPNKKGARL WLGTYDTPRE AALAYDRAAY DIRGTRAILN FPHLIGSNFE PTRKGKRQKS  180
ALEQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-26105168669ATERF1
3gcc_A5e-26105168669ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017226038.11e-136PREDICTED: ethylene-responsive transcription factor 13-like
TrEMBLA0A175YFN61e-135A0A175YFN6_DAUCS; Uncharacterized protein
STRINGXP_009798818.14e-47(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44840.17e-29ethylene-responsive element binding factor 13