PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_029750

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

NF-YB

Protein Properties

Length: 310aa MW: 35083.3 Da PI: 7.5905

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_029750	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	153.8	3.1e-48	20	114	3	97
NF-YB 3 eqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelegek 97 e+d++lPianv+rimk++lPana i+k+ ket+ ecvsefisfvt+eas+kc++e+rkt+ngdd++wa+ lGf++y++plk yl +yre+eg++ DCAR_029750 20 ERDQLLPIANVARIMKEILPANAEIAKEGKETMLECVSEFISFVTGEASEKCRKERRKTVNGDDIVWAIDRLGFDNYAQPLKRYLDRYREIEGDH 114 78******************************************************************************************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	1.5E-45	20	124	IPR009072	Histone-fold
SuperFamily	SSF47113	7.88E-35	22	117	IPR009072	Histone-fold
Pfam	PF00808	1.8E-23	24	88	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	2.5E-16	52	70	No hit	No description
PROSITE pattern	PS00685	0	55	71	IPR003956	Transcription factor, NFYB/HAP3, conserved site
PRINTS	PR00615	2.5E-16	71	89	No hit	No description
PRINTS	PR00615	2.5E-16	90	108	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 310 aa Download sequence Send to blast
MTSKNSEAAG SSSKPPQPYE RDQLLPIANV ARIMKEILPA NAEIAKEGKE TMLECVSEFI 60 SFVTGEASEK CRKERRKTVN GDDIVWAIDR LGFDNYAQPL KRYLDRYREI EGDHRANMNI 120 VHNRVGYDHE ENGRFHLYVK DAQQDRIDDN HPNGLPTTQM LSLVMGTLYR KFIEKDIKNL 180 EDFQKAILDI FDTINSALPG KHYDVPPQKD VEACFKEWKE AKKEPERKKL FTEFMTKNVI 240 LGKLDETSLV TGLVTPPAAM AAKRAGETLP QLSIIKSIPD VIFVPTATIL ALISVKVSRR 300 MFVNNVAYP*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4g91_B	2e-39	20	109	3	92	Transcription factor HapC (Eurofung)
4g92_B	2e-39	20	109	3	92	Transcription factor HapC (Eurofung)
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017225070.1	1e-112	PREDICTED: nuclear transcription factor Y subunit B-4-like
TrEMBL	A0A175YG73	0.0	A0A175YG73_DAUCS; Uncharacterized protein
STRING	Migut.B01543.1.p	2e-75	(Erythranthe guttata)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47810.1	9e-48	nuclear factor Y, subunit B5

Link Out ? help Back to Top
Phytozome	DCAR_029750