PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_029842
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family B3
Protein Properties Length: 232aa    MW: 26636.2 Da    PI: 5.1663
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_029842genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B331.63e-10131223398
                  EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
           B3   3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                  k ++++ + + + +++p +f  +    + ++k++++  +   sW+++++  + ++r+ +++G  +F +a +L++gD + F+ +++s  e++v +++
  DCAR_029842 131 K-FITNAHPTDDEVTIPVEFK-SLTD-QWKKKDIIMVYKGRFSWKLEIKKAREGNRTSIKGGFIQFRNALQLDVGDCCFFRWINESYNEFRVEIVK 223
                  4.445555566779******6.5533.356789***************99999999*************************998888888998876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.73E-9798IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.6E-7899IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.00361099IPR003340B3 DNA binding domain
SuperFamilySSF1019363.92E-12126222IPR015300DNA-binding pseudobarrel domain
CDDcd100174.69E-8127223No hitNo description
Gene3DG3DSA:2.40.330.106.8E-11128224IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508638.769128225IPR003340B3 DNA binding domain
SMARTSM010190.013129225IPR003340B3 DNA binding domain
PfamPF023621.0E-7129223IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MDYATFVPDF FKYITPDDCS SNDLFLPEKF CDMQQDNLKE NCILTIRNGY KMHVPYDRNN  60
RKFGEMGALF RDFGLAGGEV LIFELVDGRN FNLYIVGEDG NEIDYSAIPQ SCQASSSCGV  120
STYSTGWKFV KFITNAHPTD DEVTIPVEFK SLTDQWKKKD IIMVYKGRFS WKLEIKKARE  180
GNRTSIKGGF IQFRNALQLD VGDCCFFRWI NESYNEFRVE IVKAAFIAHA E*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A175YF331e-172A0A175YF33_DAUCS; Uncharacterized protein