PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_030200
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family B3
Protein Properties Length: 213aa    MW: 24048.1 Da    PI: 9.8681
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_030200genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B335.71.6e-11117210399
                  EE-..-HHHHT..T-EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
           B3   3 kvltpsdvlks..grlvlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                   v+++ ++l+     +++p kf ++ +++  e+  l++  ++g +sW+v l  +k+ +r+ l +GW+   k+ +L +gD++vF   g s++++++ v+
  DCAR_030200 117 EVEIKQSHLQDydFGVTIPVKFKNATKNVV-EGEALKI--RHGlKSWNVVL--KKRTNRVELLSGWSVLWKDLELMTGDICVFNNAG-SKRKFNLEVY 208
                  455555555554456899999965555443.3434554..4566*******..9*****99***********************666.6666788887 PP

                  -S CS
           B3  98 rk 99 
                  rk
  DCAR_030200 209 RK 210
                  76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.35E-10114209IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.0E-11115211IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.0039116211IPR003340B3 DNA binding domain
PROSITE profilePS508639.46117211IPR003340B3 DNA binding domain
PfamPF023625.3E-9130210IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MDSDLKVPFM FLKALIFFPR GTLPDKLKLS EDLIEKFGSK LRSGIRFLLS DGSLISGSFD  60
IVNGTIRGLQ KVYRFYDVSI GDILLFTYTG GDMFVVHAFG KDCMPKPSCK DAGLFFEVEI  120
KQSHLQDYDF GVTIPVKFKN ATKNVVEGEA LKIRHGLKSW NVVLKKRTNR VELLSGWSVL  180
WKDLELMTGD ICVFNNAGSK RKFNLEVYRK SV*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017225236.11e-133PREDICTED: uncharacterized protein LOC108201467
TrEMBLA0A175YHI21e-152A0A175YHI2_DAUCS; Uncharacterized protein