PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_030446
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family MYB
Protein Properties Length: 315aa    MW: 35974.1 Da    PI: 4.9884
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_030446genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.17.4e-173481148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg WT+eEd  l +++  +G g+W++ a+  g++Rt+k+c++rw++yl
      DCAR_030446 34 RGTWTAEEDMALMNYISHHGEGRWNSLAHSAGLKRTGKSCRLRWLNYL 81
                     89********************************************97 PP
2Myb_DNA-binding48.91.5e-1587130146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ T eE++ +++++ ++G++ W++Ia++++ gRt++++k++w++
      DCAR_030446  87 RGNITLEEQLVILELHSRWGNR-WSKIAQHLP-GRTDNEIKNYWRT 130
                      7999******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129423.0252985IPR017930Myb domain
SuperFamilySSF466892.32E-3032128IPR009057Homeodomain-like
SMARTSM007175.5E-143383IPR001005SANT/Myb domain
PfamPF002499.5E-163481IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.1E-223588IPR009057Homeodomain-like
CDDcd001671.54E-103681No hitNo description
PROSITE profilePS5129418.2186136IPR017930Myb domain
SMARTSM007171.4E-1386134IPR001005SANT/Myb domain
PfamPF002495.5E-1487130IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-2289135IPR009057Homeodomain-like
CDDcd001674.22E-1091130No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MDAKRERNSK EVAEMITNSC DDQEEETMIE DLRRGTWTAE EDMALMNYIS HHGEGRWNSL  60
AHSAGLKRTG KSCRLRWLNY LRPDVRRGNI TLEEQLVILE LHSRWGNRWS KIAQHLPGRT  120
DNEIKNYWRT RVQKHAKQLK CDVNSKQFRD TVRYLWMPRL VERIQAASGD STGFAKATEA  180
TGYNNSNDNI NNLSVPSQVI VMPETDKMMC DNLESMVQSE TNNPSSFTPE NISTTASLAT  240
DSNTNLSLDL INPIQNSYVS DELGFTDTLM SPVGYYNQGL GYQFIEQKTS NPWMDSGEIL  300
DNFWSTAADI WILN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C3e-251912812120MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017225349.10.0PREDICTED: transcription factor MYB108-like
TrEMBLA0A175YHM00.0A0A175YHM0_DAUCS; Uncharacterized protein
STRINGPOPTR_0010s15970.11e-106(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13972375
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G48000.11e-84myb domain protein 112