PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_030484
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family GATA
Protein Properties Length: 157aa    MW: 17016.2 Da    PI: 9.4995
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_030484genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA58.68.2e-193568134
         GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34
                 C+ CgttkTplWR gp g+k+LCnaCG++ rk++
  DCAR_030484 35 CADCGTTKTPLWRGGPAGPKSLCNACGIRSRKRK 68
                 ********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577164.66E-132969No hitNo description
PROSITE profilePS5011412.732965IPR000679Zinc finger, GATA-type
SMARTSM004012.7E-152981IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.5E-153369IPR013088Zinc finger, NHR/GATA-type
CDDcd002026.86E-123469No hitNo description
PfamPF003201.5E-163568IPR000679Zinc finger, GATA-type
PROSITE patternPS0034403560IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 157 aa     Download sequence    Send to blast
MADSSDRGSD CDENITKACD KVVRDEAPNQ GAKTCADCGT TKTPLWRGGP AGPKSLCNAC  60
GIRSRKRKRA LMGLSNKEEK KPKKNNSNAS TITSSDGSSS NNGEDVVERR FLCVDSENVL  120
QRPRSSMCKK RRKFGEEERR AAMLLMALSC GSVFAY*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1128132KKRRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017224313.11e-111PREDICTED: GATA transcription factor 16
TrEMBLA0A175YH981e-109A0A175YH98_DAUCS; Uncharacterized protein
STRINGGorai.005G065300.11e-42(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA19992362
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06740.12e-21GATA transcription factor 15