PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_030559
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family bHLH
Protein Properties Length: 219aa    MW: 25240.6 Da    PI: 4.6769
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_030559genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH22.12.8e-07142182754
                  HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
          HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                  e+ErrRR+++N+++  L  l+Pk      +Kl  a+iL+ A+eY+ +L
  DCAR_030559 142 EAERRRRAKLNERLYHL--LVPKI-----TKLGRASILRDAIEYVMEL 182
                  89************999..89996.....7**************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474598.24E-13138195IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-9141188IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.6E-12142194IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.4E-5142182IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.95E-8142187No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MIQTLNSQDE ISPDHIHLNN SSLNLFQQFD DHNMENENKS LLGSPDEQLN ADHRPLNTYG  60
QEDLDTFQKS LINNASASVN AQMINNIMEP MKTRKRRSDD RDSMNRSDSL SDDEDNNNDE  120
NDSDGKYRRR NGKGGAQCKN LEAERRRRAK LNERLYHLLV PKITKLGRAS ILRDAIEYVM  180
ELKQQVEDLQ SELESNIEND PDDNDQSTLQ YIRGCTWK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
19297TRKRRS
2127147RRRNGKGGAQCKNLEAERRRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017233999.11e-114PREDICTED: transcription factor ABORTED MICROSPORES-like isoform X2
TrEMBLA0A175YID91e-158A0A175YID9_DAUCS; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA96722227
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16910.14e-18bHLH family protein