PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_030731
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family C2H2
Protein Properties Length: 196aa    MW: 21827.2 Da    PI: 5.2872
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_030731genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.90.000163860123
                 EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                 y+C+ C++ F++   L  H++ H
  DCAR_030731 38 YECTFCKRGFTNAQALGGHMNIH 60
                 99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576679.67E-73665No hitNo description
PROSITE profilePS5015711.5523865IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.3E-43864IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.00973860IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002804060IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    Send to blast
MDCNKQGNFS ETSSDENDNV SSQRLKGNDK ATAIGRFYEC TFCKRGFTNA QALGGHMNIH  60
RKDKAKSKPK SGAIQTSNSK STAHDFDQVS NSSMYLVPIT NEHAHYQANM GGTLMNYQFY  120
LPMPVPSCPP QYAYYNLTDS IEHVASSRDL KMQEEVLETD LSLEVLKEKS ADEAVDRIEH  180
EVDLELRLGH DPGLD*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017225425.11e-147PREDICTED: transcriptional regulator SUPERMAN-like
TrEMBLA0A175YJY31e-145A0A175YJY3_DAUCS; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21362152
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17810.11e-16C2H2 family protein