PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_030745
Common NameDcMYB1
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family MYB
Protein Properties Length: 234aa    MW: 26589.9 Da    PI: 6.3677
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_030745genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.11.5e-161461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W+ eEd++l+  ++q G g+W++ ++  g+ R++k+c++rw +yl
      DCAR_030745 14 KGPWSSEEDQILISFIQQNGHGNWRALPKLAGLLRCGKSCRLRWINYL 61
                     79******************************99************97 PP
2Myb_DNA-binding55.21.7e-1767112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++++eE+e +++++++lG++ W++Ia++++ gRt++++k+ w+++l
      DCAR_030745  67 RGNFSKEEEETIIELHQKLGNK-WAAIAAKLP-GRTDNEIKNVWHTHL 112
                      89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.9E-24564IPR009057Homeodomain-like
PROSITE profilePS5129415.907961IPR017930Myb domain
SuperFamilySSF466891.95E-3010108IPR009057Homeodomain-like
SMARTSM007179.0E-131363IPR001005SANT/Myb domain
PfamPF002497.0E-151461IPR001005SANT/Myb domain
CDDcd001674.43E-91661No hitNo description
PROSITE profilePS5129426.48762116IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.9E-2765117IPR009057Homeodomain-like
SMARTSM007173.3E-1566114IPR001005SANT/Myb domain
PfamPF002492.4E-1667112IPR001005SANT/Myb domain
CDDcd001672.42E-1069112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0010200Biological Processresponse to chitin
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MGRAPCCEKM GLKKGPWSSE EDQILISFIQ QNGHGNWRAL PKLAGLLRCG KSCRLRWINY  60
LRPDIKRGNF SKEEEETIIE LHQKLGNKWA AIAAKLPGRT DNEIKNVWHT HLKKKLKNYD  120
QVKNESNVKM QVESENRRNS PQHSTSELSS VTDSSAKAKC VIKSEQNTEL SESSKIPEID  180
ASFWSEEFTI NNQDKGVPGI IEEFQESGNV DAEMDFWCNL FSGAEDFKDL PEF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A1e-27121162105MYB PROTO-ONCOGENE PROTEIN
1mse_C1e-27121162105C-Myb DNA-Binding Domain
1msf_C1e-27121162105C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that regulates freezing tolerance by affecting expression of CBF genes. {ECO:0000269|PubMed:24415840}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00375DAPTransfer from AT3G23250Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA), jasmonic acid (JA), salt (NaCl), ethylene and auxin (IAA) (PubMed:16463103). Down-regulated by cold treatment (PubMed:24415840). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:24415840}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB2187780.0AB218778.1 Daucus carota mRNA for transcription factor DcMYB1, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017224603.11e-173PREDICTED: myb-related protein Myb4-like
SwissprotQ9SJX82e-78MYB14_ARATH; Transcription factor MYB14
TrEMBLA0A175YHM51e-172A0A175YHM5_DAUCS; Uncharacterized protein
TrEMBLQ2V0V61e-172Q2V0V6_DAUCA; Transcription factor DcMYB1
STRINGXP_009629052.15e-91(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31180.12e-79myb domain protein 14
Publications ? help Back to Top
  1. Chen Y, et al.
    AtMYB14 Regulates Cold Tolerance in Arabidopsis.
    Plant Mol. Biol. Rep., 2013. 31: p. 87-97
    [PMID:24415840]