PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_030778
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family GATA
Protein Properties Length: 244aa    MW: 27633.3 Da    PI: 8.1285
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_030778genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA596.2e-19162196135
         GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                  C++C+t +TplWR gp g+ktLCnaCG++y++ +l
  DCAR_030778 162 CQHCQTEQTPLWRAGPMGPKTLCNACGVRYKSGRL 196
                  *******************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011413.046156192IPR000679Zinc finger, GATA-type
SMARTSM004015.1E-18156206IPR000679Zinc finger, GATA-type
SuperFamilySSF577164.13E-15158219No hitNo description
Gene3DG3DSA:3.30.50.103.5E-16160194IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.31E-16161209No hitNo description
PROSITE patternPS003440162187IPR000679Zinc finger, GATA-type
PfamPF003201.2E-16162196IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MEALDEFLNF SDEDEKTKLP LSSSPLFSFN GLKDDDPPSV TEFVEEELEW LSNKDAFPAL  60
ESCMDIILDQ SAIFQSDQNH LSPVSVLENS GTSYIGNLMV PTSFPVRGRS KRTRKRRRRF  120
PELSIRQPWQ WNQMSMEDLK QEHENPFVSK TVTRVATIGR KCQHCQTEQT PLWRAGPMGP  180
KTLCNACGVR YKSGRLVPEY RPASSPTFSS KLHSNSHKKI MEKRRQSQLS EMVVNGVCGY  240
GVG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1110118KRTRKRRRR
2113117RKRRR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes. {ECO:0000269|PubMed:12139008}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00377DAPTransfer from AT3G24050Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017224491.10.0PREDICTED: GATA transcription factor 1-like
SwissprotQ8LAU93e-41GATA1_ARATH; GATA transcription factor 1
TrEMBLA0A175YI560.0A0A175YI56_DAUCS; Uncharacterized protein
STRINGXP_009365479.14e-56(Pyrus x bretschneideri)
STRINGXP_002518163.12e-56(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40762445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24050.11e-38GATA transcription factor 1