PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_030924

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

Nin-like

Protein Properties

Length: 180aa MW: 20241.3 Da PI: 10.4387

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_030924	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	48.2	2.1e-15	2	41	6	45
RWP-RK 6 sledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWP 45 +le++sk+F p++dAAk+ gv+ ++ KriCR +GIkRW DCAR_030924 2 NLENVSKHFGRPLNDAAKSFGVSRSTFKRICRGLGIKRWQ 41 7899***********************************5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	12.411	1	71	IPR003035	RWP-RK domain
Pfam	PF02042	8.7E-15	1	40	IPR003035	RWP-RK domain
Gene3D	G3DSA:3.10.20.240	1.8E-17	90	169	No hit	No description
SuperFamily	SSF54277	1.89E-18	90	173	No hit	No description
SMART	SM00666	3.6E-19	91	173	IPR000270	PB1 domain
PROSITE profile	PS51745	20.99	91	173	IPR000270	PB1 domain
Pfam	PF00564	1.1E-16	94	170	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 180 aa Download sequence Send to blast
MNLENVSKHF GRPLNDAAKS FGVSRSTFKR ICRGLGIKRW QSGKRRMNGN FSSRLGKGIN 60 QEQPGRRNFG STSMAAVNET VVVHSSQDLN KMIVKATYKD VAIRFKLPDL SGIAELENNV 120 IERLHLKRNN FTIKYQDEEG DLVLIACDKD VRECIEISRS LKETTVKLLL DLPLNHNAL*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017226040.1	1e-119	PREDICTED: protein NLP7-like isoform X1
Refseq	XP_017226041.1	1e-119	PREDICTED: protein NLP7-like isoform X2
TrEMBL	A0A175YIK0	1e-129	A0A175YIK0_DAUCS; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12836	2	19

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24020.1	5e-18	NIN like protein 7

Link Out ? help Back to Top
Phytozome	DCAR_030924