PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_031001

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

NAC

Protein Properties

Length: 239aa MW: 27448.8 Da PI: 8.7974

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_031001	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	104	1.9e-32	9	86	50	128
NAM 50 kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 k++ +e+ewyfFs+rd+ky++g r+nra+ sgyWkatg+dk+++s +g+ vg+kk Lvfy+g+ pkg+ktdW+mheyrl DCAR_031001 9 KAEFGENEWYFFSPRDRKYPNGARPNRAAVSGYWKATGTDKAIYS-GGKYVGVKKALVFYQGKPPKGTKTDWIMHEYRL 86 4555889************************************.99***************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	41.76	1	114	IPR003441	NAC domain
SuperFamily	SSF101941	6.02E-40	11	114	IPR003441	NAC domain
Pfam	PF02365	6.5E-15	15	86	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 239 aa Download sequence Send to blast
MTRLSRDKKA EFGENEWYFF SPRDRKYPNG ARPNRAAVSG YWKATGTDKA IYSGGKYVGV 60 KKALVFYQGK PPKGTKTDWI MHEYRLNESR SSPNKQHGSS MRLDDWVLCR IYKKKNTARV 120 CEDEPRVDDF RTNNYSVENV CANELPKMAC PNDLPKLEFP RTSSLSHLWE MDYFGSISQL 180 LNETTSYDAH NIMTMAPSRT TEMGEMSQAY ADSVKFQVNN ESSMLNQQSV FVNSIFEF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	2e-51	9	119	68	173	NAC domain-containing protein 19
3swm_B	2e-51	9	119	68	173	NAC domain-containing protein 19
3swm_C	2e-51	9	119	68	173	NAC domain-containing protein 19
3swm_D	2e-51	9	119	68	173	NAC domain-containing protein 19
3swp_A	2e-51	9	119	68	173	NAC domain-containing protein 19
3swp_B	2e-51	9	119	68	173	NAC domain-containing protein 19
3swp_C	2e-51	9	119	68	173	NAC domain-containing protein 19
3swp_D	2e-51	9	119	68	173	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds DNA motifs 5'-CGT[AG](5N)NACG[ACT][AC][AT][ACG][ACT]-3' and 5'-CACG[ACT][AC][AT][AGT][CT]-3' in target genes promoters. Promotes leaf senescence and reduces fruit yield and sugar content, probably by establishing abscisic acid (ABA) homeostasis. {ECO:0000269\|PubMed:29760199}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Accumulates during age-dependent and dark-induced leaf senescence. {ECO:0000269\|PubMed:29760199}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017224430.1	1e-174	PREDICTED: NAC transcription factor 29-like
Swissprot	K4BWV2	2e-82	NAP1_SOLLC; NAC domain-containing protein 1
TrEMBL	A0A175YKR2	0.0	A0A175YKR2_DAUCS; Uncharacterized protein
STRING	cassava4.1_013467m	3e-88	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA746	24	103

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69490.1	1e-70	NAC-like, activated by AP3/PI

Link Out ? help Back to Top
Phytozome	DCAR_031001

Publications ? help Back to Top
Tomato Genome Consortium The tomato genome sequence provides insights into fleshy fruit evolution. Nature, 2012. 485(7400): p. 635-41 [PMID:22660326] Ma X, et al. The NAC Transcription Factor SlNAP2 Regulates Leaf Senescence and Fruit Yield in Tomato. Plant Physiol., 2018. 177(3): p. 1286-1302 [PMID:29760199]