PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_031122

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

M-type_MADS

Protein Properties

Length: 252aa MW: 28288.5 Da PI: 4.2627

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_031122	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	49.3	6.1e-16	21	62	8	49
HHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 8 nrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 ++qvtfskRr+g++ KA+EL+v ++aevav+ s g+++ + DCAR_031122 21 QQQVTFSKRRKGLFNKASELCVVTNAEVAVLAQSVGGRVFAF 62 579*******************************99999877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	17.717	7	66	IPR002100	Transcription factor, MADS-box
SMART	SM00432	1.3E-16	7	65	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	1.7E-18	8	82	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.1E-15	21	62	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	5.9E-5	28	43	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	5.9E-5	43	64	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 252 aa Download sequence Send to blast
MEPKKTRGRQ RIEIKKLQGN QQQVTFSKRR KGLFNKASEL CVVTNAEVAV LAQSVGGRVF 60 AFGHPSVDRV VEAYLGNNVV DWGEVGEDLR SNYEEWNKKY LEIVEETKVE KAKVSIVEES 120 SRRFWWENCF EDLEVDELEI FIDSMEKLKT NLMVKGEELK INEIANADDP QSLDDQVVVP 180 NSDQFVSYNV GFANGDLMMP AVNYGSSGLN KYGFVNDGLV LDDNGGDNLQ DLSDFGTFGV 240 PNTSDLYFSQ D*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017226172.1	0.0	PREDICTED: agamous-like MADS-box protein AGL29
TrEMBL	A0A175YJB1	0.0	A0A175YJB1_DAUCS; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2134	22	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60440.1	8e-29	AGAMOUS-like 62

Link Out ? help Back to Top
Phytozome	DCAR_031122