PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_031176
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family ARR-B
Protein Properties Length: 485aa    MW: 54580.6 Da    PI: 4.7615
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_031176genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like23.21.5e-07205227225
      G2-like   2 prlrWtpeLHerFveaveqLGGse 25 
                  +r++Wt +LH++Fv+av+ + G +
  DCAR_031176 205 TRVVWTVDLHQKFVKAVNYM-GFD 227
                  79****************99.555 PP
2Response_reg82.71.1e-27221301109
                   EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTES CS
  Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGak 95 
                   vl+vdD+p+ +++l+++l+k  y ev+++  ++eal+ll+e++  +D+++ D++mp+mdG++ll++   e  +lp+i+++  ge + + + ++ Ga 
   DCAR_031176  22 VLVVDDDPTWLKILEKMLKKCSY-EVTTCCLAREALDLLRERKdgFDIVISDVNMPDMDGFKLLEHVGLEM-DLPVIMMSVDGETSRVMKGVQHGAC 116
                   89*********************.***************999999**********************6644.8************************ PP

                   EEEESS--HHHHHH CS
  Response_reg  96 dflsKpfdpeelvk 109
                   d+l Kp+ ++el +
   DCAR_031176 117 DYLLKPIRMKELKN 130
                   **********9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521725.83E-3619141IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23001.4E-4419143No hitNo description
SMARTSM004482.8E-3220132IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011043.43621136IPR001789Signal transduction response regulator, receiver domain
PfamPF000727.6E-2522130IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.73E-3023136No hitNo description
Gene3DG3DSA:1.10.10.603.5E-7203231IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0009735Biological Processresponse to cytokinin
GO:0010082Biological Processregulation of root meristem growth
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 485 aa     Download sequence    Send to blast
MDSYSNGFSS PRAEAFPAGL RVLVVDDDPT WLKILEKMLK KCSYEVTTCC LAREALDLLR  60
ERKDGFDIVI SDVNMPDMDG FKLLEHVGLE MDLPVIMMSV DGETSRVMKG VQHGACDYLL  120
KPIRMKELKN IWQHVFRKKI HEVRDIEGLE SGIEEFQMMR NGISDQSDDG FSFCGGDLNS  180
GRKRKDFDNK HDDKNFGDPS AGKRTRVVWT VDLHQKFVKA VNYMGFDISS PDLGPKGPLV  240
SDAHEIQKAT SSSGVGLHYS FGTPDLDTKY TTFSSALPPQ FSWNREHKPQ IDPNNVFNHL  300
SLPDLDQVQV NQKTFLPSYP TPFNKERDKL THIKAMPPRA TECISLNIRQ QMPGENTFGL  360
NPVQSECSTT AFNPSESITR TAWSSKDQVL DHISVSDLDS FNGNLILGKN SALTSLNENF  420
PPCLLPEDCS PTYFEMQNSD FSDSNNPGLL LEPSMYLYDS LKFDYEYPCD PIEYPVMDQG  480
LFIA*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00010PBMTransfer from AT1G67710Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017224636.10.0PREDICTED: two-component response regulator ORR26
TrEMBLA0A175YJS10.0A0A175YJS1_DAUCS; Uncharacterized protein
STRINGGorai.005G173300.11e-126(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA67882433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67710.12e-78response regulator 11